Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4538 183 4e-41 seq678 104 3e-17 >seq4538 Length=19519 Score = 183 bits (202), Expect = 4e-41 Identities = 1109/1754 (63%), Gaps = 45/1754 (3%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 ||| | | |||||| |||||||| || |||||||| ||| |||||| | | |||| Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGC 8447 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || || | ||| | ||||| | |||| || |||||| ||| |||||| Sbjct 8446 ATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 8387 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCA 115727 || ||||| || ||||| || ||||| | | | | | | | | ||| ||||| Sbjct 8386 TCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGA-GATCTCCCA 8328 Query 115728 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC 115787 ||||| |||| || ||| |||||| ||||||| | | ||||||||| || || Sbjct 8327 AACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCC 8268 Query 115788 ACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATC 115847 ||| | || || | | |||||| | | ||||| || || || | || || Sbjct 8267 ACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTC 8208 Query 115848 CTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 115906 || || || |||||||| ||||| || || || || | ||| |||| Sbjct 8207 CTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACG-AGAGTAGA 8149 Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCT 115965 |||||| || |||||||| ||||| || ||| |||||||| || | ||| | ||| Sbjct 8148 TGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGGCA 8090 Query 115966 GTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTG 116025 || ||||| || || | ||| | |||||||| ||||| | || ||| ||| Sbjct 8089 GTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTGCTTC 8030 Query 116026 AGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 | | ||||||| | || | ||||| ||| ||||| ||| | || || Sbjct 8029 AAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCC---CACATGTCATATTGAAGC 7973 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || | ||| || || || || ||| ||||||| |||| || | || |||| Sbjct 7972 TCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAGC 7913 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| | || | || |||||||| |||||||||||||| | || | | Sbjct 7912 TCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGC 7853 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACG--GCACAAAATAAATACATCCGCGAGACCTT 116260 || ||||| || || || | || || | | || || |||| || ||||||| Sbjct 7852 TTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG--CATCAGCAAGACCTT 7795 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGGA 116319 | ||||| || ||||||| | || | | ||| ||||| || ||| | | || Sbjct 7794 GAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-TCTGGAACTGGG 7736 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || |||| |||| | |||| | || ||| ||||| | || || ||| Sbjct 7735 TAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCGTGA 7676 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | | ||| || || |||| ||||| ||||| | ||||| || | ||| Sbjct 7675 AGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGAT 7616 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| ||| || || | | ||||| || |||||| | ||| ||||| |||| Sbjct 7615 GCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGG 7556 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || ||||| || | |||||| || || |||| ||| || ||||||||| Sbjct 7555 TTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTG 7496 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 |||||||| | || | || ||||| || || | | |||||||| | ||| | | | Sbjct 7495 TAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTT 7436 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCC-----CTCCTCCTCGTACTTTGTGTAGAGG 116673 | | || | ||||| | | | |||| ||| ||||||| || || | Sbjct 7435 TGAGCCTTG-ACAGT--CTTACG---GCCCATGTTCTCAGCCTCGTATTTCTCATACAAA 7382 Query 116674 GCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 ||||||||||| ||||| | | || | | || || || | || || | | Sbjct 7381 GCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAAT 7322 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 | ||| | | || ||||| ||||||||||| | ||||| ||||| || || || Sbjct 7321 GTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAG 7262 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 || ||||| || ||| | ||||| | || || || || | || | || || Sbjct 7261 AAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCA 7202 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGA 116907 | || ||| |||||||| || || ||||| | || | | || | |||| | Sbjct 7201 AAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTG---TTA 7145 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| |||| | ||||| || || || ||| || || |||||||| |||| || || Sbjct 7144 CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCG 7085 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACT-TGTTGGCTCTGACATCGTGGATGTG 117026 | || | || ||||| || ||| || || |||| | || ||||| | Sbjct 7084 TTGGAGTTTCCGTTTGTACCAGCAAT-GTAGGCTCCAGTGGCACGGATTCTGTGGACATT 7026 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 | ||| ||||| || || ||| || || ||||| | | | | || | || || Sbjct 7025 AAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAAT 6966 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 ||||| || ||| |||| | |||||||||| || || | ||||| ||| Sbjct 6965 ACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGG 6906 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTA 117204 |||||||| || || ||||| | |||||| | || || ||| ||||||| Sbjct 6905 AGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTGCTGGACATCAAG 6848 Query 117205 TCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATA 117264 | ||||||||| | | ||| ||| | || ||||||||||| | | || |||||| Sbjct 6847 TTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATA 6788 Query 117265 AACATGTATTGGGG 117278 | ||| | ||| || Sbjct 6787 ATCATATGTTGTGG 6774 >seq678 Length=9679 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||||||||||||||| | || || ||||| ||||| Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 | ||| ||||| |||||||||||||| || || | || |||||| |||||||| Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| ||| || || |||| ||||| | ||||||| Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470780678840