Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 183 4e-41
seq678 104 3e-17
>seq4538
Length=19519
Score = 183 bits (202), Expect = 4e-41
Identities = 1109/1754 (63%), Gaps = 45/1754 (3%)
Strand=Plus/Minus
Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608
||| | | |||||| |||||||| || |||||||| ||| |||||| | | ||||
Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGC 8447
Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668
|| || | ||| | ||||| | |||| || |||||| ||| ||||||
Sbjct 8446 ATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 8387
Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCA 115727
|| ||||| || ||||| || ||||| | | | | | | | | ||| |||||
Sbjct 8386 TCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGA-GATCTCCCA 8328
Query 115728 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC 115787
||||| |||| || ||| |||||| ||||||| | | ||||||||| || ||
Sbjct 8327 AACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCC 8268
Query 115788 ACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATC 115847
||| | || || | | |||||| | | ||||| || || || | || ||
Sbjct 8267 ACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTC 8208
Query 115848 CTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 115906
|| || || |||||||| ||||| || || || || | ||| ||||
Sbjct 8207 CTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACG-AGAGTAGA 8149
Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCT 115965
|||||| || |||||||| ||||| || ||| |||||||| || | ||| | |||
Sbjct 8148 TGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGGCA 8090
Query 115966 GTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTG 116025
|| ||||| || || | ||| | |||||||| ||||| | || ||| |||
Sbjct 8089 GTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTGCTTC 8030
Query 116026 AGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
| | ||||||| | || | ||||| ||| ||||| ||| | || ||
Sbjct 8029 AAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCC---CACATGTCATATTGAAGC 7973
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
|| | ||| || || || || ||| ||||||| |||| || | || ||||
Sbjct 7972 TCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAGC 7913
Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202
||| | || | || |||||||| |||||||||||||| | || | |
Sbjct 7912 TCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGC 7853
Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACG--GCACAAAATAAATACATCCGCGAGACCTT 116260
|| ||||| || || || | || || | | || || |||| || |||||||
Sbjct 7852 TTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG--CATCAGCAAGACCTT 7795
Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGGA 116319
| ||||| || ||||||| | || | | ||| ||||| || ||| | | ||
Sbjct 7794 GAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-TCTGGAACTGGG 7736
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| | || |||| |||| | |||| | || ||| ||||| | || || |||
Sbjct 7735 TAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCGTGA 7676
Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439
||||| | | | ||| || || |||| ||||| ||||| | ||||| || | |||
Sbjct 7675 AGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGAT 7616
Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499
|||| ||| || || | | ||||| || |||||| | ||| ||||| ||||
Sbjct 7615 GCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGG 7556
Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559
|| || || ||||| || | |||||| || || |||| ||| || |||||||||
Sbjct 7555 TTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTG 7496
Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618
|||||||| | || | || ||||| || || | | |||||||| | ||| | | |
Sbjct 7495 TAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTT 7436
Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCC-----CTCCTCCTCGTACTTTGTGTAGAGG 116673
| | || | ||||| | | | |||| ||| ||||||| || || |
Sbjct 7435 TGAGCCTTG-ACAGT--CTTACG---GCCCATGTTCTCAGCCTCGTATTTCTCATACAAA 7382
Query 116674 GCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733
||||||||||| ||||| | | || | | || || || | || || | |
Sbjct 7381 GCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAAT 7322
Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793
| ||| | | || ||||| ||||||||||| | ||||| ||||| || || ||
Sbjct 7321 GTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAG 7262
Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853
|| ||||| || ||| | ||||| | || || || || | || | || ||
Sbjct 7261 AAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCA 7202
Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGA 116907
| || ||| |||||||| || || ||||| | || | | || | |||| |
Sbjct 7201 AAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTG---TTA 7145
Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967
||| |||| | ||||| || || || ||| || || |||||||| |||| || ||
Sbjct 7144 CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCG 7085
Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACT-TGTTGGCTCTGACATCGTGGATGTG 117026
| || | || ||||| || ||| || || |||| | || ||||| |
Sbjct 7084 TTGGAGTTTCCGTTTGTACCAGCAAT-GTAGGCTCCAGTGGCACGGATTCTGTGGACATT 7026
Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086
| ||| ||||| || || ||| || || ||||| | | | | || | || ||
Sbjct 7025 AAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAAT 6966
Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146
||||| || ||| |||| | |||||||||| || || | ||||| |||
Sbjct 6965 ACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGG 6906
Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTA 117204
|||||||| || || ||||| | |||||| | || || ||| |||||||
Sbjct 6905 AGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTGCTGGACATCAAG 6848
Query 117205 TCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATA 117264
| ||||||||| | | ||| ||| | || ||||||||||| | | || ||||||
Sbjct 6847 TTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATA 6788
Query 117265 AACATGTATTGGGG 117278
| ||| | ||| ||
Sbjct 6787 ATCATATGTTGTGG 6774
>seq678
Length=9679
Score = 104 bits (114), Expect = 3e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || |||||||||||||||||||||||| | || || ||||| |||||
Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
| ||| ||||| |||||||||||||| || || | || |||||| ||||||||
Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||| ||| || || |||| ||||| | |||||||
Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613470780678840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |