Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 111 4e-19
seq4373 87.8 4e-12
>seq4739
Length=56954
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||| || || | |||||| || || |||||||||| ||||||||| | | |||
Sbjct 20899 CGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTT 20840
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||| || || || || || || |||||||| ||||| || |||||||| ||| ||
Sbjct 20839 CGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCC 20780
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| || | |||||| | || ||| || || |
Sbjct 20779 TCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGA 20720
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || | ||| || ||
Sbjct 20719 GTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691
Score = 98.7 bits (108), Expect = 2e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| | ||||||||| |||||||| || | |||||| || | | ||
Sbjct 20616 CGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTA 20557
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| ||||||||||| | || || ||||| ||| ||| |||
Sbjct 20556 CGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCT 20497
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||| || | | ||||| || |
Sbjct 20496 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGA 20437
Query 199589 GTGATCGTCTTACCCGT 199605
|| || |||||||| ||
Sbjct 20436 GTAATAGTCTTACCAGT 20420
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || ||||| ||||||||||||| ||||||||| | ||| ||
Sbjct 21127 CGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 21068
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || ||||| ||||| ||||| || || || || ||
Sbjct 21067 CGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCC 21008
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| |||||| |||| || || | | ||| || |||||
Sbjct 21007 TCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAA 20948
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || || || || || ||
Sbjct 20947 GTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTG 20910
>seq4373
Length=63444
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || ||||| |||||||||||||||| ||||||||| | || | || |||
Sbjct 31447 AGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCT 31506
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||||||||||||||| | ||||| ||||| || ||||| || |||
Sbjct 31507 TCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCC 31566
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 31567 TGGATCTT 31574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178849866673183
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |