Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4739 111 4e-19 seq4373 87.8 4e-12 >seq4739 Length=56954 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||| || || | |||||| || || |||||||||| ||||||||| | | ||| Sbjct 20899 CGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTT 20840 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || || || || || |||||||| ||||| || |||||||| ||| || Sbjct 20839 CGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCC 20780 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| || | |||||| | || ||| || || | Sbjct 20779 TCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGA 20720 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || | ||| || || Sbjct 20719 GTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||||||||| |||||||| || | |||||| || | | || Sbjct 20616 CGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTA 20557 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | || || ||||| ||| ||| ||| Sbjct 20556 CGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCT 20497 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | | ||||| || | Sbjct 20496 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGA 20437 Query 199589 GTGATCGTCTTACCCGT 199605 || || |||||||| || Sbjct 20436 GTAATAGTCTTACCAGT 20420 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| ||||||||||||| ||||||||| | ||| || Sbjct 21127 CGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 21068 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||| ||||| ||||| || || || || || Sbjct 21067 CGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCC 21008 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| || || | | ||| || ||||| Sbjct 21007 TCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAA 20948 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 20947 GTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTG 20910 >seq4373 Length=63444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| |||||||||||||||| ||||||||| | || | || ||| Sbjct 31447 AGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCT 31506 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| | ||||| ||||| || ||||| || ||| Sbjct 31507 TCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCC 31566 Query 199538 TGAATCTT 199545 || ||||| Sbjct 31567 TGGATCTT 31574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178849866673183