Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 105 8e-18
seq4373 100 3e-16
>seq4739
Length=56954
Score = 105 bits (116), Expect = 8e-18
Identities = 169/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 46351 TGTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTG 46410
||||| || ||| ||||| | || ||| | ||||| |||| || |||||||||||
Sbjct 21377 TGTACATAATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTG 21318
Query 46411 GATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG 46470
|| ||||||||| || || || | || || | ||||| || ||||| ||||| ||
Sbjct 21317 AATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCG 21258
Query 46471 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGT 46530
||| ||||| | || | | |||||| ||| |||||| ||||| | | | ||
Sbjct 21257 CTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGT 21198
Query 46531 GTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590
||| || || || || | ||| || || ||||| |||| || || |||||||| ||
Sbjct 21197 GTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTG 21138
Query 46591 CAT 46593
|||
Sbjct 21137 CAT 21135
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| ||||| || || || |||| ||||||||||||||||||||
Sbjct 20587 CTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 20528
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||||||| || ||||| | || | || ||||||||| |||||| |||||
Sbjct 20527 GATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGA 20472
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||||| | || || | || || || |||||||| |||||
Sbjct 21098 CTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAA 21039
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||| || || | || | | ||||||||| |||||| ||| | |
Sbjct 21038 AATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGACTTCACATT 20979
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||| ||||| || |||| ||||| || || || |||| || |||||
Sbjct 20978 GTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAAC 20919
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 20918 GAAGATCTGCAT 20907
>seq4373
Length=63444
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||| ||||| | || |||||||||||| |||||||||
Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| ||||| ||||| |||||||| ||||||||||| ||||| | ||
Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551
Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509
| | |||||||||| ||||||
Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTT 31574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565204846035480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |