Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4739 105 8e-18 seq4373 100 3e-16 >seq4739 Length=56954 Score = 105 bits (116), Expect = 8e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 46351 TGTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTG 46410 ||||| || ||| ||||| | || ||| | ||||| |||| || ||||||||||| Sbjct 21377 TGTACATAATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTG 21318 Query 46411 GATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG 46470 || ||||||||| || || || | || || | ||||| || ||||| ||||| || Sbjct 21317 AATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCG 21258 Query 46471 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGT 46530 ||| ||||| | || | | |||||| ||| |||||| ||||| | | | || Sbjct 21257 CTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGT 21198 Query 46531 GTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 ||| || || || || | ||| || || ||||| |||| || || |||||||| || Sbjct 21197 GTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTG 21138 Query 46591 CAT 46593 ||| Sbjct 21137 CAT 21135 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| ||||| || || || |||| |||||||||||||||||||| Sbjct 20587 CTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 20528 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||||||| || ||||| | || | || ||||||||| |||||| ||||| Sbjct 20527 GATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGA 20472 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| | || || | || || || |||||||| ||||| Sbjct 21098 CTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAA 21039 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || || | || | | ||||||||| |||||| ||| | | Sbjct 21038 AATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGACTTCACATT 20979 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| ||||| || |||| ||||| || || || |||| || ||||| Sbjct 20978 GTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAAC 20919 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 20918 GAAGATCTGCAT 20907 >seq4373 Length=63444 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| ||||| | || |||||||||||| ||||||||| Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| ||||| |||||||| ||||||||||| ||||| | || Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | | |||||||||| |||||| Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTT 31574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565204846035480