Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4373 104 2e-17 seq678 104 2e-17 seq4739 98.7 1e-15 seq1669 93.3 4e-14 >seq4373 Length=63444 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||| || | ||||||||||| | || | ||| || || Sbjct 31574 AAGATCCAGGACAAGGAGGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAG 31515 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || |||| || ||||||| ||||||||||||||||||||| |||| || ||| Sbjct 31514 CAACTCGAAGACGGCCGTACCCTCAGCGACTACAACATCCAAAAGGAGTCGACCCTCCAT 31455 Query 38448 TTGGTGCTGCGT 38459 | ||||| ||| Sbjct 31454 CTCGTGCTCCGT 31443 >seq678 Length=9679 Score = 104 bits (114), Expect = 2e-17 Identities = 189/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||| || || ||| || || | || ||||| | ||||||||| ||| || || Sbjct 7811 GTAGGTATCAATAAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 7752 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||| | || ||||| || || ||||| | ||| || || | || || Sbjct 7751 ACCATAGAAGAATCGGGCCTCAGGAACTTGAACTTCATTGCTGAAGCGTTCAAGTAGGTT 7692 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| ||||| ||| || || || || || ||||| |||||| | || Sbjct 7691 CTCGTTGACGATTCCGTCAGAGGCAGCAAAGAAAGCGAGGACGTGGGAGATGAAGTAACG 7632 Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||| | | | ||||||| |||||||| || || | |||||| Sbjct 7631 CTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTTGAGATCCTTGGATAGATCAATCTCCTC 7572 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| ||||| || || |||||||| Sbjct 7571 AGCAGTCCAGAACGAAGCCTCAGCCTTCTTGTACAT 7536 >seq4739 Length=56954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || | || ||||| ||||| || |||| ||||| | |||||| | | Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| |||| || || | || || ||||| ||||| | |||||||| || || Sbjct 20749 ACAACG-TTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTT 20807 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || ||||| || || |||| || || ||| |||||||||||||||||| Sbjct 20808 ATCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAG 20867 Query 38433 GAAGCGACGCTGCATTTGGTGCT 38455 ||| | || || || ||||| || Sbjct 20868 GAATCCACACTCCACTTGGTTCT 20890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || | || |||||||| ||||||| ||| ||||| Sbjct 20991 AAGATCCAAGACAAGGAGGGTATCCCACCTGATCAACAGCGACTCATTTTCGCAGGCAAG 21050 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | || ||| | ||||||||||||||||||||| | || || ||| Sbjct 21051 CAACTTGAGGATGGCCGAACCTTGTCCGACTACAACATCCAAAAGGAGTCCACTCTTCAT 21110 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 21111 TTGGTACTTCGT 21122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| ||||| | ||||||||||| | |||| ||| || || Sbjct 21219 AAGATCCAGGATAAGGAGGGTATTCCACCAGACCAACAGCGATTGATTTTCGCTGGTAAG 21278 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446 || |||| || | || ||||| | |||||||||||| |||||||| ||| || ||||| Sbjct 21279 CAATTGGAGGATGGTCGTACCCTTAGCGACTACAACATTCAAAAGGAGAGC-ACCCTGCA 21337 Query 38447 TTTGGTGCTGCGT 38459 |||||||| ||| Sbjct 21338 CTTGGTGCTTCGT 21350 >seq1669 Length=79912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||| || | |||||||| || || || | ||| || ||| Sbjct 7547 AAGATCCAGGACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAA 7488 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAG 38436 || || || |||| || ||||||| |||||||||||||||||||| || Sbjct 7487 CAACTCGAAGACGGCCGAACCCTCAGCGACTACAACATCCAAAAGGTAG 7439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143108492160