Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4373 104 2e-17
seq678 104 2e-17
seq4739 98.7 1e-15
seq1669 93.3 4e-14
>seq4373
Length=63444
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||| || | ||||||||||| | || | ||| || ||
Sbjct 31574 AAGATCCAGGACAAGGAGGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAG 31515
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || |||| || ||||||| ||||||||||||||||||||| |||| || |||
Sbjct 31514 CAACTCGAAGACGGCCGTACCCTCAGCGACTACAACATCCAAAAGGAGTCGACCCTCCAT 31455
Query 38448 TTGGTGCTGCGT 38459
| ||||| |||
Sbjct 31454 CTCGTGCTCCGT 31443
>seq678
Length=9679
Score = 104 bits (114), Expect = 2e-17
Identities = 189/276 (68%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||| || || ||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 7811 GTAGGTATCAATAAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 7752
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||| | || ||||| || || ||||| | ||| || || | || ||
Sbjct 7751 ACCATAGAAGAATCGGGCCTCAGGAACTTGAACTTCATTGCTGAAGCGTTCAAGTAGGTT 7692
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| ||||| ||| || || || || || ||||| |||||| | ||
Sbjct 7691 CTCGTTGACGATTCCGTCAGAGGCAGCAAAGAAAGCGAGGACGTGGGAGATGAAGTAACG 7632
Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||||| | | | ||||||| |||||||| || || | ||||||
Sbjct 7631 CTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTTGAGATCCTTGGATAGATCAATCTCCTC 7572
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| ||||| ||||| || || ||||||||
Sbjct 7571 AGCAGTCCAGAACGAAGCCTCAGCCTTCTTGTACAT 7536
>seq4739
Length=56954
Score = 98.7 bits (108), Expect = 1e-15
Identities = 145/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || | || ||||| ||||| || |||| ||||| | |||||| | |
Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| |||| || || | || || ||||| ||||| | |||||||| || ||
Sbjct 20749 ACAACG-TTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTT 20807
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || ||||| || || |||| || || ||| ||||||||||||||||||
Sbjct 20808 ATCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAG 20867
Query 38433 GAAGCGACGCTGCATTTGGTGCT 38455
||| | || || || ||||| ||
Sbjct 20868 GAATCCACACTCCACTTGGTTCT 20890
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || | || |||||||| ||||||| ||| |||||
Sbjct 20991 AAGATCCAAGACAAGGAGGGTATCCCACCTGATCAACAGCGACTCATTTTCGCAGGCAAG 21050
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | || ||| | ||||||||||||||||||||| | || || |||
Sbjct 21051 CAACTTGAGGATGGCCGAACCTTGTCCGACTACAACATCCAAAAGGAGTCCACTCTTCAT 21110
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 21111 TTGGTACTTCGT 21122
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || ||||| ||||| | ||||||||||| | |||| ||| || ||
Sbjct 21219 AAGATCCAGGATAAGGAGGGTATTCCACCAGACCAACAGCGATTGATTTTCGCTGGTAAG 21278
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446
|| |||| || | || ||||| | |||||||||||| |||||||| ||| || |||||
Sbjct 21279 CAATTGGAGGATGGTCGTACCCTTAGCGACTACAACATTCAAAAGGAGAGC-ACCCTGCA 21337
Query 38447 TTTGGTGCTGCGT 38459
|||||||| |||
Sbjct 21338 CTTGGTGCTTCGT 21350
>seq1669
Length=79912
Score = 93.3 bits (102), Expect = 4e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||| || | |||||||| || || || | ||| || |||
Sbjct 7547 AAGATCCAGGACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAA 7488
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAG 38436
|| || || |||| || ||||||| |||||||||||||||||||| ||
Sbjct 7487 CAACTCGAAGACGGCCGAACCCTCAGCGACTACAACATCCAAAAGGTAG 7439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500143108492160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |