Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4739 127 8e-24 seq1114 122 3e-22 >seq4739 Length=56954 Score = 127 bits (140), Expect = 8e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || ||||||| || || |||||||| || || |||||||| || | ||||| Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | |||| || ||||| |||||||| || ||||| || || ||||||||| | | Sbjct 20749 ACAACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTA 20808 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || ||||||||||| || ||| ||||| | |||| || || || | |||| Sbjct 20809 TCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGG 20868 Query 391240 ATGCAACACTTCACTTAGTATTAAGACT 391267 | | ||||| ||||| || | ||||| Sbjct 20869 AATCCACACTCCACTTGGTTCTCAGACT 20896 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || ||||||| || || || ||| | || |||||||| || Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || || ||||| ||||| || || || ||||||||| Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| |||| || |||||||| ||||| |||| ||| | || || || Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 || | ||||| | || ||||| || ||| Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGTA 21116 Score = 95.1 bits (104), Expect = 5e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 391069 CACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTA 391128 || |||||||||| ||||||||||| || || || || ||||||| ||| || | | Sbjct 20415 CAGTGACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCA 20474 Query 391129 AACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAG 391188 | || || || || |||||||| |||||||| || |||||||| || || ||| | | Sbjct 20475 AGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCG 20534 Query 391189 GGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACAC 391248 | || || || || || || | || | | ||||| || ||| | ||||| | || | Sbjct 20535 GCAAGCAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTC 20594 Query 391249 TTCACTTAGT 391258 | ||||| || Sbjct 20595 TCCACTTGGT 20604 >seq1114 Length=145283 Score = 122 bits (134), Expect = 3e-22 Identities = 198/285 (69%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||| ||||| || || ||||| ||| | ||||| ||||| || || |||| Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || |||||| | |||||||| || | |||| || || || |||||||| | Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || || || || | | ||| | || || || | |||| ||| | || | Sbjct 47676 TTGCGTACGGTCTTG-------AGAAGGATGAG--GACAAGATTATTGCAGTCTACGACT 47726 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | ||||||||||| ||||| || || || ||| || | || || ||||| || | Sbjct 47727 TGGGTGGAGGAACCTTTGATATCTCCGTTCTGGAGATTCAAAAGGGTGTTTTTGAGGTCA 47786 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 || | ||||| || |||||||| | ||||| || || |||||| Sbjct 47787 AGTCCACCAACGGAGATACTCACTTGGGAGGAGAGGACTTTGATA 47831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975598184326892