Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 127 8e-24
seq1114 122 3e-22
>seq4739
Length=56954
Score = 127 bits (140), Expect = 8e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || ||||||| || || |||||||| || || |||||||| || | |||||
Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| |||| || ||||| |||||||| || ||||| || || ||||||||| | |
Sbjct 20749 ACAACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTA 20808
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
| ||| | || ||||||||||| || ||| ||||| | |||| || || || | ||||
Sbjct 20809 TCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGG 20868
Query 391240 ATGCAACACTTCACTTAGTATTAAGACT 391267
| | ||||| ||||| || | |||||
Sbjct 20869 AATCCACACTCCACTTGGTTCTCAGACT 20896
Score = 113 bits (124), Expect = 2e-19
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || |||||||| || ||||||| || || || ||| | || |||||||| ||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | | || || || ||||| ||||| || || || |||||||||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || | |||||| |||| || |||||||| ||||| |||| ||| | || || ||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259
|| | ||||| | || ||||| || |||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGTA 21116
Score = 95.1 bits (104), Expect = 5e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 391069 CACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTA 391128
|| |||||||||| ||||||||||| || || || || ||||||| ||| || | |
Sbjct 20415 CAGTGACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCA 20474
Query 391129 AACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAG 391188
| || || || || |||||||| |||||||| || |||||||| || || ||| | |
Sbjct 20475 AGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCG 20534
Query 391189 GGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACAC 391248
| || || || || || || | || | | ||||| || ||| | ||||| | || |
Sbjct 20535 GCAAGCAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTC 20594
Query 391249 TTCACTTAGT 391258
| ||||| ||
Sbjct 20595 TCCACTTGGT 20604
>seq1114
Length=145283
Score = 122 bits (134), Expect = 3e-22
Identities = 198/285 (69%), Gaps = 9/285 (3%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || |||| ||||| || || ||||| ||| | ||||| ||||| || || ||||
Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || || || |||||| | |||||||| || | |||| || || || |||||||| |
Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499
| || || || || | | ||| | || || || | |||| ||| | || |
Sbjct 47676 TTGCGTACGGTCTTG-------AGAAGGATGAG--GACAAGATTATTGCAGTCTACGACT 47726
Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559
| ||||||||||| ||||| || || || ||| || | || || ||||| || |
Sbjct 47727 TGGGTGGAGGAACCTTTGATATCTCCGTTCTGGAGATTCAAAAGGGTGTTTTTGAGGTCA 47786
Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
|| | ||||| || |||||||| | ||||| || || ||||||
Sbjct 47787 AGTCCACCAACGGAGATACTCACTTGGGAGGAGAGGACTTTGATA 47831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975598184326892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |