Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq167 327 1e-84
seq4538 163 4e-35
seq1393 118 1e-21
seq1114 89.7 7e-13
seq4003 86.0 8e-12
>seq167
Length=14118
Score = 327 bits (362), Expect = 1e-84
Identities = 520/743 (70%), Gaps = 6/743 (1%)
Strand=Plus/Plus
Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465
|||||||| || ||||| || ||| | ||||| | ||||| || || ||
Sbjct 2284 TTCTTATGCTTTCGTTTGAATTCTGAAACAAAGTGGTTCACAAGTCTGTTGTCAAAGTCC 2343
Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525
|||||||||||||| || || || || || | ||||||||||||||||| | ||||||
Sbjct 2344 TCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCAAAGATACCCTCCTCAATG 2403
Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585
| || | |||||||| || || || ||||| || ||||| ||||| ||||| | ||
Sbjct 2404 GTCAAAAGTGAAACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCTCTCA 2463
Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645
| || ||||| ||||||||||| || || || || || || || || || || |||
Sbjct 2464 CCCTCAACCTTCTTGTCGAGACCGTAAGCAATGGCAGCAGCGGTAGGCTCGTTGATGATA 2523
Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705
|||||| ||| || ||||| || | ||||| || || ||||| ||||| ||||||
Sbjct 2524 CGAAGAACGTTGAGACCAGCGATTAAACCGGCATCCTTGGTAGCTTGACGTTGTGAATCG 2583
Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765
|||||||||| ||||| || ||||| |||| |||| | ||| || || | ||
Sbjct 2584 GTAAAGTAGGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCCTCA 2643
Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825
|| | ||| |||| ||| | | ||| || ||||| ||||| | | || ||||||
Sbjct 2644 GCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAAATTTCTTCTGGTGTGAATTGTTTC 2703
Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885
| || || || || |||| ||| | | || || || || | | | || || |
Sbjct 2704 TTCTCGCCCTTGAACTCAATTTCGACGACTGGCTT-TC--CACCTCGGTCGAGGACGGTG 2760
Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945
| | | | ||||||||| | ||||| | ||||| | ||||||| |||||| | |
Sbjct 2761 AAAGGAAAGTGCTTCATATCGGCCTGGACTTCCTGGTCTGCGAACTTTCGTCCGATCAAA 2820
Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005
|||||||| || || |||||||| ||||||||||| ||||||||| || || ||
Sbjct 2821 CGCTTTGCGTCGAAGACTGTGTTGGCTGGGTTCATGGCGACTTGGTTCTTTGCGGCATCT 2880
Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065
||||| ||||||||| || || || || |||||| | || ||||| ||||| || ||
Sbjct 2881 CCGATCAGACGTTCAGTA---TCTGTGAAGGCGACGAAGGAAGGGGTGGTTCGGTTTCCC 2937
Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125
|||||||| || ||||| || | || || | | ||| || || || || || ||
Sbjct 2938 TGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCCACACAGGAGTAGGTG 2997
Query 8126 GTTCCTAAATCAATACCGATTGC 8148
||||| | ||| ||||| || ||
Sbjct 2998 GTTCCAAGATCGATACCTATGGC 3020
Score = 170 bits (188), Expect = 2e-37
Identities = 545/846 (64%), Gaps = 17/846 (2%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || ||||| || || || | ||| || || || || || ||
Sbjct 1387 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATACGCTCGATATCCTCCTTGGAC 1446
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | ||||| || || || || |||||| | ||||||||| | |||| || |
Sbjct 1447 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCAGTTCCCTTCTCGAGA 1506
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| || |||| || || || || |||||||| || | || | ||||||||| |
Sbjct 1507 GCAGAGACGTTCATGATTCCGTTGGCGTCAACATCAAAGGTGACCTCAATTTGTGGGACA 1566
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| |
Sbjct 1567 CCACGTGGTGCAGGTGGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 1626
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||| ||||| || |||||| ||| ||| ||||||| || ||
Sbjct 1627 GTGCGTTGACGCTCACCCTCGAAGACTTGAATAAGCACACCAGGTTGGTTGTCGGAGAAG 1686
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | |||||| | |||||| || || ||||| || || | | ||||
Sbjct 1687 GTAGAGAAGACCTCGGATTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTC 1746
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986
|| |||||| ||| || | ||||| |||| || | || || | ||| | |
Sbjct 1747 ATTTGACCACCGGCAGTCTCAATACCAAGGGACAATGGCGCGACATCGAGGAGAAGAATC 1806
Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038
|| |||| | ||| || |||| | | ||||| || ||||| |
Sbjct 1807 TCGTTGGTGGACTTGGA-AGAAGTGT------CACCAGAGAGAATGGCAGCCTGGACGGC 1859
Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098
|| |||||||| || |||||||| ||||| || | || || | || || ||||||||
Sbjct 1860 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTAAA 1919
Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158
|| || | | | | ||| ||| | ||||| || || || || ||||| | |||||
Sbjct 1920 GTAGTCGGTGATGAGCTTTTGGATTCTTGGGATACGGGTAGAACCTCCGACAAGGACGAT 1979
Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218
|| | || || ||||| || ||||| | ||| || ||||| || |
Sbjct 1980 CTCGTGAACCTTGGATTTGTCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTAGT 2039
Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278
||||| | |||| || || || || || | ||||| || ||||| || ||
Sbjct 2040 GGTGGATCGGAAAAGGTCCTGGCAGAGCTCTTCGAATCTGGCACGAGTGATGGAGGTGTA 2099
Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338
|| || | || ||| | | || ||||||||||||| |||||||| | || || |
Sbjct 2100 AAAGTCGATACCCTCGAAGAGAGAGTCAATTTCAATGGAGGTTTGTGCGGAAGAGGAGAG 2159
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398
|||||||| || ||||| || || || || | |||||| || ||||| | || |||
Sbjct 2160 AGTTCGCTTAGCTCGCTCGCATGCGGTGCGAAGACGACGGAGAGCACGGGCATTGGAGGA 2219
Query 7399 AATATC 7404
|| |||
Sbjct 2220 AAGATC 2225
>seq4538
Length=19519
Score = 163 bits (180), Expect = 4e-35
Identities = 611/940 (65%), Gaps = 31/940 (3%)
Strand=Plus/Minus
Query 105055 TCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCG 105114
||||| ||||| |||||||||| | | || ||||||||||| | ||| | | |||| |
Sbjct 7807 TCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT-GCTC-TTTCTTG 7750
Query 105115 TTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTT 105172
|| || |||||| |||| ||||||||| ||| || ||||| | || | || |
Sbjct 7749 CTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT-CTTGACAACAACT 7691
Query 105173 TCGTAACACGATGTAACTCTTCATG--GTTA-AACT--CGTTCTTCTCGACATCAACGTA 105227
| | | || || | |||| | || | || | || |||| || |||||| ||
Sbjct 7690 TGGCAG-ACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTC---ATCAACATA 7635
Query 105228 TTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAA-ACT 105286
| |||| | || | |||||| | ||| || |||||| ||| || | | | | |||
Sbjct 7634 TGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATC-TGGTGCACAGTACT 7576
Query 105287 CCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACT 105346
| | ||| || || |||| || || | || ||||||| || || ||||| ||
Sbjct 7575 CAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCT 7516
Query 105347 TTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAA 105406
|| || || || || ||||| ||||| | ||| |||| || || | || | || |
Sbjct 7515 TTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGA 7456
Query 105407 TAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGT 105466
||| | | ||||| || ||| ||| ||| | || |||| ||||
Sbjct 7455 GAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGT 7396
Query 105467 ATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGAT 105526
||||||| || | | | |||||||| | |||||| ||||| | | ||| || |
Sbjct 7395 ATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGT 7336
Query 105527 CAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAA 105586
||| || | ||||| ||| | | | |||||| || |||||||| ||||||||||
Sbjct 7335 TAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAA 7276
Query 105587 TCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAA 105646
|||| | || | || || || || | ||||||| | || || ||| || |
Sbjct 7275 TCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGA 7216
Query 105647 TTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTT 105706
|| || || || | | ||| ||||||||||| || | |||| |||| || ||
Sbjct 7215 GGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC-- 7158
Query 105707 TACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACA 105760
| ||||| || | |||| |||||||| ||||| ||| | ||||| | ||
Sbjct 7157 -AGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCA 7099
Query 105761 TTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTA 105820
| |||| ||| || | ||| |||| ||||| ||| ||| | | | | | ||||| |
Sbjct 7098 TAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGA 7039
Query 105821 CATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACACTCTT 105877
||| || | | || ||||| ||||| ||| | | ||| ||||| | || |
Sbjct 7038 TTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATA-GCGCA-AGTC-T 6982
Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937
| | || || |||||||| || || || || ||||| | | || |||||||| ||||
Sbjct 6981 TCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATG 6922
Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977
| | ||||| | || ||||||||| || || |||||
Sbjct 6921 AGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGG 6882
>seq1393
Length=42225
Score = 118 bits (130), Expect = 1e-21
Identities = 246/364 (68%), Gaps = 23/364 (6%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| ||||||||||| || || || || ||||| | || ||||| | |||
Sbjct 5828 ATCGAAATCCTCACCACCCAAATGAGTGTCACCAGCGGTAGAAAGAACCTCAAAAACACC 5887
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
||||||| | | || ||||| || || || ||||| || || | |||||
Sbjct 5888 ATCTTCAATAGAGAGAAGGGACACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGA- 5946
Query 7573 TACGTTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629
|| || || |||||| ||| || |||||||| |||||||| || || ||
Sbjct 5947 ----TTTGTCTC----TCTTTGCCAACCTTGTCAAGACCGTATGCGATAGCTGCGGCGGT 5998
Query 7630 TGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689
||||| || | ||||| || ||||| |||||||| | | ||||| || || ||
Sbjct 5999 AGGTTCGTTGACGATACGGAGGACGTTCAAACCAGCAATGATACCAGCATCCTTGGTTGC 6058
Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749
||||| || ||||| |||||||| || || || || || |||| ||||| ||
Sbjct 6059 TTGTCTCTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGCGTGGGTGACCTT--- 6115
Query 7750 ACCGAGATACGA----TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805
|| || | || ||| |||| || ||||| || ||||| ||| | |||||||
Sbjct 6116 -TCGGGAAAGGAAACCTTCAGCGACTTCCTTCATCTTTCCAAGAATCATGGCGGAAATCT 6174
Query 7806 CTTC 7809
||||
Sbjct 6175 CTTC 6178
>seq1114
Length=145283
Score = 89.7 bits (98), Expect = 7e-13
Identities = 219/329 (67%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| || || || || |||||||| ||||| || ||| | ||||| ||||| | |||
Sbjct 47830 ATCAAAGTCCTCTCCTCCCAAGTGAGTATCTCCGTTGGTGGACTTGACCTCAAAAACACC 47771
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|| ||| | | | || | |||||| || || ||||||| ||| | || | |
Sbjct 47770 CTTTTGAATCTCCAGAACGGAGATATCAAAGGTTCCTCCACCCAAGTCGTA---GACTGC 47714
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
| | | ||| || | |||| | ||||||||||| | || || || ||||| ||
Sbjct 47713 AATAATCTTGTCCTCATCCTTCTCA---AGACCGTACGCAAGGGCAGCTGCGGTTGGCTC 47657
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGT 7693
|||| | | ||| || || ||||| || ||| | ||||| || || |||||
Sbjct 47656 GTTAACCACTCTCAGAACATTAAGACCAGCGAT--TTGACCAGCATCCTTGGTGGCTTGA 47599
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
||||| |||||||| ||||| || || || || || || || | |||| ||| |
Sbjct 47598 CGTTGGGAATCGTTGAAGTACGCTGGAACTGTAACAACAGCATTTTGGACTGGCTTTGTG 47539
Query 7754 AGATACGATTCCGCGATATCTTTCATTTT 7782
|| || || || ||| | || ||||| ||
Sbjct 47538 AGGTAGGACTCAGCGGTCTCCTTCATCTT 47510
>seq4003
Length=28829
Score = 86.0 bits (94), Expect = 8e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 11449 TTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT 11508
|| ||||| || ||||||||||| || ||||||||||| || ||||| | |||||
Sbjct 23026 TTTCCAATTGCGTCAATTTCATCAATGAAGATAATACAAGGCGTATTTTTCCTTGCCAGA 23085
Query 11509 TCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAAC-GATGA 11567
|| | ||| || ||||| || || || || |||||||| || || ||| | |
Sbjct 23086 GAGAAGAGATCCCGAACTCTGGAAGCACCCACACCAACAAACATCTCTACAAACTCAGAA 23145
Query 11568 CCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGT 11627
|| | || ||||| ||||| ||| ||||| || ||| | || |||||| | ||
Sbjct 23146 CCACTGACGCTGAA-GAAAGGCACGCCTGATTCTCCAGCTGTGGCCTTTGCTAACAAAGT 23204
Query 11628 TTTACCTGTACCTGGT 11643
|||||| ||||| |||
Sbjct 23205 TTTACCAGTACCGGGT 23220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635095096929160
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