Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq167 327 1e-84 seq4538 163 4e-35 seq1393 118 1e-21 seq1114 89.7 7e-13 seq4003 86.0 8e-12 >seq167 Length=14118 Score = 327 bits (362), Expect = 1e-84 Identities = 520/743 (70%), Gaps = 6/743 (1%) Strand=Plus/Plus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 |||||||| || ||||| || ||| | ||||| | ||||| || || || Sbjct 2284 TTCTTATGCTTTCGTTTGAATTCTGAAACAAAGTGGTTCACAAGTCTGTTGTCAAAGTCC 2343 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 |||||||||||||| || || || || || | ||||||||||||||||| | |||||| Sbjct 2344 TCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCAAAGATACCCTCCTCAATG 2403 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | || | |||||||| || || || ||||| || ||||| ||||| ||||| | || Sbjct 2404 GTCAAAAGTGAAACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCTCTCA 2463 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | || ||||| ||||||||||| || || || || || || || || || || ||| Sbjct 2464 CCCTCAACCTTCTTGTCGAGACCGTAAGCAATGGCAGCAGCGGTAGGCTCGTTGATGATA 2523 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 |||||| ||| || ||||| || | ||||| || || ||||| ||||| |||||| Sbjct 2524 CGAAGAACGTTGAGACCAGCGATTAAACCGGCATCCTTGGTAGCTTGACGTTGTGAATCG 2583 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 |||||||||| ||||| || ||||| |||| |||| | ||| || || | || Sbjct 2584 GTAAAGTAGGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCCTCA 2643 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || | ||| |||| ||| | | ||| || ||||| ||||| | | || |||||| Sbjct 2644 GCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAAATTTCTTCTGGTGTGAATTGTTTC 2703 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 | || || || || |||| ||| | | || || || || | | | || || | Sbjct 2704 TTCTCGCCCTTGAACTCAATTTCGACGACTGGCTT-TC--CACCTCGGTCGAGGACGGTG 2760 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | | | ||||||||| | ||||| | ||||| | ||||||| |||||| | | Sbjct 2761 AAAGGAAAGTGCTTCATATCGGCCTGGACTTCCTGGTCTGCGAACTTTCGTCCGATCAAA 2820 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 |||||||| || || |||||||| ||||||||||| ||||||||| || || || Sbjct 2821 CGCTTTGCGTCGAAGACTGTGTTGGCTGGGTTCATGGCGACTTGGTTCTTTGCGGCATCT 2880 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||||||| || || || || |||||| | || ||||| ||||| || || Sbjct 2881 CCGATCAGACGTTCAGTA---TCTGTGAAGGCGACGAAGGAAGGGGTGGTTCGGTTTCCC 2937 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 |||||||| || ||||| || | || || | | ||| || || || || || || Sbjct 2938 TGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCCACACAGGAGTAGGTG 2997 Query 8126 GTTCCTAAATCAATACCGATTGC 8148 ||||| | ||| ||||| || || Sbjct 2998 GTTCCAAGATCGATACCTATGGC 3020 Score = 170 bits (188), Expect = 2e-37 Identities = 545/846 (64%), Gaps = 17/846 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| || || || || || || Sbjct 1387 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATACGCTCGATATCCTCCTTGGAC 1446 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || |||||| | ||||||||| | |||| || | Sbjct 1447 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCAGTTCCCTTCTCGAGA 1506 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| || || || || |||||||| || | || | ||||||||| | Sbjct 1507 GCAGAGACGTTCATGATTCCGTTGGCGTCAACATCAAAGGTGACCTCAATTTGTGGGACA 1566 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| | Sbjct 1567 CCACGTGGTGCAGGTGGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 1626 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || |||||| ||| ||| ||||||| || || Sbjct 1627 GTGCGTTGACGCTCACCCTCGAAGACTTGAATAAGCACACCAGGTTGGTTGTCGGAGAAG 1686 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | |||||| | |||||| || || ||||| || || | | |||| Sbjct 1687 GTAGAGAAGACCTCGGATTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTC 1746 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986 || |||||| ||| || | ||||| |||| || | || || | ||| | | Sbjct 1747 ATTTGACCACCGGCAGTCTCAATACCAAGGGACAATGGCGCGACATCGAGGAGAAGAATC 1806 Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | ||| || |||| | | ||||| || ||||| | Sbjct 1807 TCGTTGGTGGACTTGGA-AGAAGTGT------CACCAGAGAGAATGGCAGCCTGGACGGC 1859 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || |||||||| || |||||||| ||||| || | || || | || || |||||||| Sbjct 1860 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTAAA 1919 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || || | | | | ||| ||| | ||||| || || || || ||||| | ||||| Sbjct 1920 GTAGTCGGTGATGAGCTTTTGGATTCTTGGGATACGGGTAGAACCTCCGACAAGGACGAT 1979 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | || || ||||| || ||||| | ||| || ||||| || | Sbjct 1980 CTCGTGAACCTTGGATTTGTCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTAGT 2039 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || || || || | ||||| || ||||| || || Sbjct 2040 GGTGGATCGGAAAAGGTCCTGGCAGAGCTCTTCGAATCTGGCACGAGTGATGGAGGTGTA 2099 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 || || | || ||| | | || ||||||||||||| |||||||| | || || | Sbjct 2100 AAAGTCGATACCCTCGAAGAGAGAGTCAATTTCAATGGAGGTTTGTGCGGAAGAGGAGAG 2159 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 |||||||| || ||||| || || || || | |||||| || ||||| | || ||| Sbjct 2160 AGTTCGCTTAGCTCGCTCGCATGCGGTGCGAAGACGACGGAGAGCACGGGCATTGGAGGA 2219 Query 7399 AATATC 7404 || ||| Sbjct 2220 AAGATC 2225 >seq4538 Length=19519 Score = 163 bits (180), Expect = 4e-35 Identities = 611/940 (65%), Gaps = 31/940 (3%) Strand=Plus/Minus Query 105055 TCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCG 105114 ||||| ||||| |||||||||| | | || ||||||||||| | ||| | | |||| | Sbjct 7807 TCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT-GCTC-TTTCTTG 7750 Query 105115 TTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTT 105172 || || |||||| |||| ||||||||| ||| || ||||| | || | || | Sbjct 7749 CTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT-CTTGACAACAACT 7691 Query 105173 TCGTAACACGATGTAACTCTTCATG--GTTA-AACT--CGTTCTTCTCGACATCAACGTA 105227 | | | || || | |||| | || | || | || |||| || |||||| || Sbjct 7690 TGGCAG-ACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTC---ATCAACATA 7635 Query 105228 TTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAA-ACT 105286 | |||| | || | |||||| | ||| || |||||| ||| || | | | | ||| Sbjct 7634 TGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATC-TGGTGCACAGTACT 7576 Query 105287 CCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACT 105346 | | ||| || || |||| || || | || ||||||| || || ||||| || Sbjct 7575 CAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCT 7516 Query 105347 TTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAA 105406 || || || || || ||||| ||||| | ||| |||| || || | || | || | Sbjct 7515 TTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGA 7456 Query 105407 TAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGT 105466 ||| | | ||||| || ||| ||| ||| | || |||| |||| Sbjct 7455 GAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGT 7396 Query 105467 ATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGAT 105526 ||||||| || | | | |||||||| | |||||| ||||| | | ||| || | Sbjct 7395 ATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGT 7336 Query 105527 CAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAA 105586 ||| || | ||||| ||| | | | |||||| || |||||||| |||||||||| Sbjct 7335 TAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAA 7276 Query 105587 TCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAA 105646 |||| | || | || || || || | ||||||| | || || ||| || | Sbjct 7275 TCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGA 7216 Query 105647 TTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTT 105706 || || || || | | ||| ||||||||||| || | |||| |||| || || Sbjct 7215 GGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC-- 7158 Query 105707 TACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACA 105760 | ||||| || | |||| |||||||| ||||| ||| | ||||| | || Sbjct 7157 -AGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCA 7099 Query 105761 TTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTA 105820 | |||| ||| || | ||| |||| ||||| ||| ||| | | | | | ||||| | Sbjct 7098 TAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGA 7039 Query 105821 CATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACACTCTT 105877 ||| || | | || ||||| ||||| ||| | | ||| ||||| | || | Sbjct 7038 TTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATA-GCGCA-AGTC-T 6982 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 | | || || |||||||| || || || || ||||| | | || |||||||| |||| Sbjct 6981 TCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATG 6922 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 | | ||||| | || ||||||||| || || ||||| Sbjct 6921 AGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGG 6882 >seq1393 Length=42225 Score = 118 bits (130), Expect = 1e-21 Identities = 246/364 (68%), Gaps = 23/364 (6%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| ||||||||||| || || || || ||||| | || ||||| | ||| Sbjct 5828 ATCGAAATCCTCACCACCCAAATGAGTGTCACCAGCGGTAGAAAGAACCTCAAAAACACC 5887 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 ||||||| | | || ||||| || || || ||||| || || | ||||| Sbjct 5888 ATCTTCAATAGAGAGAAGGGACACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGA- 5946 Query 7573 TACGTTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 || || || |||||| ||| || |||||||| |||||||| || || || Sbjct 5947 ----TTTGTCTC----TCTTTGCCAACCTTGTCAAGACCGTATGCGATAGCTGCGGCGGT 5998 Query 7630 TGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||| || | ||||| || ||||| |||||||| | | ||||| || || || Sbjct 5999 AGGTTCGTTGACGATACGGAGGACGTTCAAACCAGCAATGATACCAGCATCCTTGGTTGC 6058 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 ||||| || ||||| |||||||| || || || || || |||| ||||| || Sbjct 6059 TTGTCTCTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGCGTGGGTGACCTT--- 6115 Query 7750 ACCGAGATACGA----TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805 || || | || ||| |||| || ||||| || ||||| ||| | ||||||| Sbjct 6116 -TCGGGAAAGGAAACCTTCAGCGACTTCCTTCATCTTTCCAAGAATCATGGCGGAAATCT 6174 Query 7806 CTTC 7809 |||| Sbjct 6175 CTTC 6178 >seq1114 Length=145283 Score = 89.7 bits (98), Expect = 7e-13 Identities = 219/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || || || |||||||| ||||| || ||| | ||||| ||||| | ||| Sbjct 47830 ATCAAAGTCCTCTCCTCCCAAGTGAGTATCTCCGTTGGTGGACTTGACCTCAAAAACACC 47771 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | | || | |||||| || || ||||||| ||| | || | | Sbjct 47770 CTTTTGAATCTCCAGAACGGAGATATCAAAGGTTCCTCCACCCAAGTCGTA---GACTGC 47714 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | | ||| || | |||| | ||||||||||| | || || || ||||| || Sbjct 47713 AATAATCTTGTCCTCATCCTTCTCA---AGACCGTACGCAAGGGCAGCTGCGGTTGGCTC 47657 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGT 7693 |||| | | ||| || || ||||| || ||| | ||||| || || ||||| Sbjct 47656 GTTAACCACTCTCAGAACATTAAGACCAGCGAT--TTGACCAGCATCCTTGGTGGCTTGA 47599 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 ||||| |||||||| ||||| || || || || || || || | |||| ||| | Sbjct 47598 CGTTGGGAATCGTTGAAGTACGCTGGAACTGTAACAACAGCATTTTGGACTGGCTTTGTG 47539 Query 7754 AGATACGATTCCGCGATATCTTTCATTTT 7782 || || || || ||| | || ||||| || Sbjct 47538 AGGTAGGACTCAGCGGTCTCCTTCATCTT 47510 >seq4003 Length=28829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 11449 TTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT 11508 || ||||| || ||||||||||| || ||||||||||| || ||||| | ||||| Sbjct 23026 TTTCCAATTGCGTCAATTTCATCAATGAAGATAATACAAGGCGTATTTTTCCTTGCCAGA 23085 Query 11509 TCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAAC-GATGA 11567 || | ||| || ||||| || || || || |||||||| || || ||| | | Sbjct 23086 GAGAAGAGATCCCGAACTCTGGAAGCACCCACACCAACAAACATCTCTACAAACTCAGAA 23145 Query 11568 CCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGT 11627 || | || ||||| ||||| ||| ||||| || ||| | || |||||| | || Sbjct 23146 CCACTGACGCTGAA-GAAAGGCACGCCTGATTCTCCAGCTGTGGCCTTTGCTAACAAAGT 23204 Query 11628 TTTACCTGTACCTGGT 11643 |||||| ||||| ||| Sbjct 23205 TTTACCAGTACCGGGT 23220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635095096929160