Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 242 5e-59
seq678 118 1e-21
>seq4538
Length=19519
Score = 242 bits (268), Expect = 5e-59
Identities = 1135/1764 (64%), Gaps = 65/1764 (4%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
||||| | ||| | ||||| || || | ||||| || || || ||||||| |||
Sbjct 6774 CCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCC 6833
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || ||||||| | || | |||||| | ||||| || ||
Sbjct 6834 ATTGAGACCTACAACTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTT 6893
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
|||||||| ||| | | ||| | || |||||||| || | | ||||||||
Sbjct 6894 GCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGAC 6953
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849
|| |||| ||||| | |||| | | || | ||| | | || || ||| ||||
Sbjct 6954 AGCATTGATGGTATTTATGACACTTTGAA-GACT-TGCGCTATGATTTCTAAGAACGCTG 7011
Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA-AGTCTCGTATTAGAGGTACA 111908
|||||||||| | | |||| || | |||| || || ||| ||||||
Sbjct 7012 GTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTAC-ATTGCTGGTACA 7070
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| || | || | || ||| |||| |||||||| || || ||| ||| || | |||
Sbjct 7071 AACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATAT 7130
Query 111969 GTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 112022
|| | || | ||| | |||| || || | || |||| ||||||||||||
Sbjct 7131 GTTGATCAGGGTGG---TAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGG 7187
Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082
||||| ||| || | ||||||||||| | || ||||| || | || |||| ||
Sbjct 7188 CACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGC 7247
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
||| ||||| |||| ||||| |||||||||||| | ||||||||| | ||||| ||
Sbjct 7248 GCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAG 7307
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202
| | ||| | | | || || || || || ||| | | || | |||
Sbjct 7308 AACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGT 7367
Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA--AGAAAGTCGGGCGACTGCGACGG 112260
|| |||||||| || | || || ||||||| |||| | || || | ||| |
Sbjct 7368 GATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCG--TAAGACTG 7425
Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320
| ||| | | ||| | |||||||| | |||| |||||||| || | || |
Sbjct 7426 TCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCTT 7485
Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380
||||| ||||| || ||||| |||| |||||| || || ||||| | ||| |||
Sbjct 7486 TCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATCC 7545
Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAA--AGATGAGACGGCTGT 112438
|| |||||||| || || || || | || | || | | |||||| || ||
Sbjct 7546 GAAGCTCCAACCTGTGCACGGAGATTGTTGAGT--ACTGTGCACCAGATGAAGTCGCCGT 7603
Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 112498
|| || | |||||| | ||||| || | ||||| ||| | |||| || | |||
Sbjct 7604 TTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACTTATGA 7663
Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558
| | || || ||||| || || ||| || ||| | || | |||||||
Sbjct 7664 CTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTTGTCAAGAACTTGAATAAGATTATTGA 7723
Query 112559 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617
|| || | ||||| ||| ||| || | || ||| | | ||| | |||||||
Sbjct 7724 TATCAACTACTACCCAGTTCCAGAA-GCAAGAAAGAGCAATTTCCGTCACAGACCAATTG 7782
Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTG----TCGCCACGCATTTGAT 112673
||| ||||| |||||||| || |||| | ||||| | ||||| | || ||
Sbjct 7783 CTCTTGGTGTTCAAGGTCTTGCTGATG----CTTTCTTGGCACTTCGCCTTCCTTTCGAG 7838
Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733
|| || || ||| | |||| | || ||||||||||| |||||||| ||| ||
Sbjct 7839 TCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGCTGCT-TT 7897
Query 112734 GAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791
|| | | || ||| ||||| || |||| |||| || || | ||| || || |
Sbjct 7898 GACTGCA-TCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAGGCTCAC 7956
Query 112792 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGA-AGGTGAG--ACCAAGCTTCAC 112847
| || || |||||| | |||||||| ||| ||||||| | | | ||| | |||
Sbjct 7957 CTGCCTC-CAAGGGCGAGCTTCAATATGACATGTGGGGCAAGACACCTACCGACCTT--- 8012
Query 112848 TACGACTGGGAC-GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906
| ||||||| ||| | ||| ||| ||| || | |||||||| |||||| | |
Sbjct 8013 TGGGACTGGGCTAGCT-TGAAGCAACAGATCGCCCAGCATGGTCTTCGCAACAGTTTGCT 8071
Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTG 112965
| || || |||||||| ||| ||| ||||| ||||||| || |||||||| |
Sbjct 8072 CGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGTTC-AACGAATGCTTCG 8130
Query 112966 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024
| || || || | |||||||| ||| | | || || |||||||| |||||
Sbjct 8131 AGCCATATACTTCCAACATCTACTCTC-GTCGTGTTCTTGCTGGAGAGTTCCAAGTTGTC 8189
Query 113025 AACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082
||| ||| || || | ||||| || || || || ||||| | | ||||||
Sbjct 8190 AACC--CATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATGAAGA 8247
Query 113083 ATC---TCATGG-TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138
| | |||| | ||| ||||| || || |||||| || | || |||| |||
Sbjct 8248 ACCGAATCATCGCTGAT----GGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGAT 8303
Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGC 113197
|| ||| | ||| || |||||||| ||| | | | | | || | | |||||
Sbjct 8304 ATCAAGGCTCTTTACAAGACTGTTTGGGAGATCTC-ACAACGTACTATCGTCCAGATGGC 8362
Query 113198 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCC 113257
|| ||||||||| |||||||||||| |||| ||||| | |||| | ||
Sbjct 8363 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCC 8422
Query 113258 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317
||| ||| ||| || | |||||| | |||||||| ||||||||| || ||
Sbjct 8423 AACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACTGG 8482
Query 113318 GATGTATTACCTCCGATCTAAGGC 113341
||||| || |||||| | | |||
Sbjct 8483 AATGTACTATCTCCGAACCATGGC 8506
>seq678
Length=9679
Score = 118 bits (130), Expect = 1e-21
Identities = 162/226 (72%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA----AAGT 102165
|||||| || || | ||||| || ||||||||| | | ||| ||| || |||
Sbjct 7913 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGT----TCGTTGGATCCAGGACAAGG 7968
Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225
| | |||||||| | || || | || ||||| |||||||||||||||||| ||
Sbjct 7969 AGTCTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTG 8028
Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285
| || ||| | || | |||| | |||||||| ||||| ||| | ||||| ||||
Sbjct 8029 GCTCTTTCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCT 8088
Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||| | ||||| ||||||||||| |||||| || |||||
Sbjct 8089 CCAACGAGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620705551179280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |