Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4538 242 5e-59 seq678 118 1e-21 >seq4538 Length=19519 Score = 242 bits (268), Expect = 5e-59 Identities = 1135/1764 (64%), Gaps = 65/1764 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| | ||||| || || | ||||| || || || ||||||| ||| Sbjct 6774 CCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCC 6833 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||||| | || | |||||| | ||||| || || Sbjct 6834 ATTGAGACCTACAACTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTT 6893 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||| ||| | | ||| | || |||||||| || | | |||||||| Sbjct 6894 GCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGAC 6953 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || |||| ||||| | |||| | | || | ||| | | || || ||| |||| Sbjct 6954 AGCATTGATGGTATTTATGACACTTTGAA-GACT-TGCGCTATGATTTCTAAGAACGCTG 7011 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA-AGTCTCGTATTAGAGGTACA 111908 |||||||||| | | |||| || | |||| || || ||| |||||| Sbjct 7012 GTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTAC-ATTGCTGGTACA 7070 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || | || | || ||| |||| |||||||| || || ||| ||| || | ||| Sbjct 7071 AACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATAT 7130 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || | || | ||| | |||| || || | || |||| |||||||||||| Sbjct 7131 GTTGATCAGGGTGG---TAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGG 7187 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| ||| || | ||||||||||| | || ||||| || | || |||| || Sbjct 7188 CACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGC 7247 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| ||||| |||| ||||| |||||||||||| | ||||||||| | ||||| || Sbjct 7248 GCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAG 7307 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | | ||| | | | || || || || || ||| | | || | ||| Sbjct 7308 AACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGT 7367 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA--AGAAAGTCGGGCGACTGCGACGG 112260 || |||||||| || | || || ||||||| |||| | || || | ||| | Sbjct 7368 GATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCG--TAAGACTG 7425 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | ||| | | ||| | |||||||| | |||| |||||||| || | || | Sbjct 7426 TCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCTT 7485 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| || ||||| |||| |||||| || || ||||| | ||| ||| Sbjct 7486 TCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATCC 7545 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAA--AGATGAGACGGCTGT 112438 || |||||||| || || || || | || | || | | |||||| || || Sbjct 7546 GAAGCTCCAACCTGTGCACGGAGATTGTTGAGT--ACTGTGCACCAGATGAAGTCGCCGT 7603 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 112498 || || | |||||| | ||||| || | ||||| ||| | |||| || | ||| Sbjct 7604 TTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACTTATGA 7663 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | || || ||||| || || ||| || ||| | || | ||||||| Sbjct 7664 CTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTTGTCAAGAACTTGAATAAGATTATTGA 7723 Query 112559 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 || || | ||||| ||| ||| || | || ||| | | ||| | ||||||| Sbjct 7724 TATCAACTACTACCCAGTTCCAGAA-GCAAGAAAGAGCAATTTCCGTCACAGACCAATTG 7782 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTG----TCGCCACGCATTTGAT 112673 ||| ||||| |||||||| || |||| | ||||| | ||||| | || || Sbjct 7783 CTCTTGGTGTTCAAGGTCTTGCTGATG----CTTTCTTGGCACTTCGCCTTCCTTTCGAG 7838 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || || || ||| | |||| | || ||||||||||| |||||||| ||| || Sbjct 7839 TCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGCTGCT-TT 7897 Query 112734 GAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 || | | || ||| ||||| || |||| |||| || || | ||| || || | Sbjct 7898 GACTGCA-TCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAGGCTCAC 7956 Query 112792 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGA-AGGTGAG--ACCAAGCTTCAC 112847 | || || |||||| | |||||||| ||| ||||||| | | | ||| | ||| Sbjct 7957 CTGCCTC-CAAGGGCGAGCTTCAATATGACATGTGGGGCAAGACACCTACCGACCTT--- 8012 Query 112848 TACGACTGGGAC-GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | ||||||| ||| | ||| ||| ||| || | |||||||| |||||| | | Sbjct 8013 TGGGACTGGGCTAGCT-TGAAGCAACAGATCGCCCAGCATGGTCTTCGCAACAGTTTGCT 8071 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTG 112965 | || || |||||||| ||| ||| ||||| ||||||| || |||||||| | Sbjct 8072 CGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGTTC-AACGAATGCTTCG 8130 Query 112966 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 | || || || | |||||||| ||| | | || || |||||||| ||||| Sbjct 8131 AGCCATATACTTCCAACATCTACTCTC-GTCGTGTTCTTGCTGGAGAGTTCCAAGTTGTC 8189 Query 113025 AACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082 ||| ||| || || | ||||| || || || || ||||| | | |||||| Sbjct 8190 AACC--CATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATGAAGA 8247 Query 113083 ATC---TCATGG-TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 | | |||| | ||| ||||| || || |||||| || | || |||| ||| Sbjct 8248 ACCGAATCATCGCTGAT----GGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGAT 8303 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGC 113197 || ||| | ||| || |||||||| ||| | | | | | || | | ||||| Sbjct 8304 ATCAAGGCTCTTTACAAGACTGTTTGGGAGATCTC-ACAACGTACTATCGTCCAGATGGC 8362 Query 113198 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCC 113257 || ||||||||| |||||||||||| |||| ||||| | |||| | || Sbjct 8363 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCC 8422 Query 113258 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317 ||| ||| ||| || | |||||| | |||||||| ||||||||| || || Sbjct 8423 AACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACTGG 8482 Query 113318 GATGTATTACCTCCGATCTAAGGC 113341 ||||| || |||||| | | ||| Sbjct 8483 AATGTACTATCTCCGAACCATGGC 8506 >seq678 Length=9679 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA----AAGT 102165 |||||| || || | ||||| || ||||||||| | | ||| ||| || ||| Sbjct 7913 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGT----TCGTTGGATCCAGGACAAGG 7968 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | |||||||| | || || | || ||||| |||||||||||||||||| || Sbjct 7969 AGTCTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTG 8028 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | || ||| | || | |||| | |||||||| ||||| ||| | ||||| |||| Sbjct 8029 GCTCTTTCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCT 8088 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| | ||||| ||||||||||| |||||| || ||||| Sbjct 8089 CCAACGAGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705551179280