Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4538 170 2e-37 >seq4538 Length=19519 Score = 170 bits (188), Expect = 2e-37 Identities = 1112/1761 (63%), Gaps = 81/1761 (5%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 |||||| || ||||| ||||| |||||| |||||||||||| ||||| | || |||| Sbjct 8405 GTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGT 8346 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || ||||| ||||||||||| | | |||||||||| | || |||| Sbjct 8345 ACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGG 8286 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACC-ATGA---GATCCTTCATCTCTTTCGACC 109675 | ||||| || || |||||| ||| | |||| | | |||||| | | |||| Sbjct 8285 AACATTTTGGATTGATCCACCA----TCAGCGATGATTCGGTTCTTCATGTTGTCAGACC 8230 Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACC 109733 | || || | | || || | | ||| ||| |||||| || || || || Sbjct 8229 AAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGG--GTTGACAACTTGGAACTCTCC 8172 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 |||||| || || ||||||||| | || || || ||||| || || ||| || Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCC 8112 Query 109794 TAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 || ||||| | ||| | || || ||||| ||||| | ||| | |||||| || || Sbjct 8111 AAGAATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAG 8055 Query 109851 ACCCTTCG------TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAA 109904 ||| | | ||| | | ||| || | || ||| || || | | || Sbjct 8054 ACCATGCTGGGCGATCTGTTGCT--TCAAGC-TAGC---CCAGTCCCAAAGGTCGGTAGG 8001 Query 109905 TTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTT 109964 | |||| || |||||| || |||||| | |||| | ||||| || || | Sbjct 8000 T---GTCTTGCC---CCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTC 7947 Query 109965 GAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGC 110021 | ||||||| | || | || |||| |||| |||| || | | || || Sbjct 7946 ATATGTCTCGTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTC---AAAGCAGC 7890 Query 110022 ATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGG 110081 ||||| || ||||||||||| || || | | | || |||| | ||||| || Sbjct 7889 GTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGG 7830 Query 110082 AAGACCACAAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGA 110139 ||| | | | | || ||| |||| || ||||| |||||||| ||| |||| || | Sbjct 7829 AAGGCGA-AGTGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTG 7772 Query 110140 TGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACC 110196 || | || || || |||| || ||||| ||||| || || | | Sbjct 7771 TGACGGAAATTGCTCTTTCTTGC---TTCTGGAACTGGGTAGTAGTTGATATCAATAATC 7715 Query 110197 CGATTGAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAACGT 110255 ||| | ||||| ||| ||| | || || || || || | | | || | || Sbjct 7714 TTATTCAAGTTCTTGACAACAA-CTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGT 7656 Query 110256 TTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGT 110315 |||| | || |||||| | || ||||||| || || | |||||| || | Sbjct 7655 GGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGAC 7596 Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375 || ||| | ||| || | ||| ||||| |||| |||||| || ||| ||| Sbjct 7595 TTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACC 7536 Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434 | ||||||||| || | ||| | |||||| |||||||| ||||||||| | ||| | | Sbjct 7535 AAGGTTCTTCTGGTTGCTCTTTCG-GTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTC 7477 Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT 110494 | || || ||||| | | |||||| | | ||| | | || |||||| | Sbjct 7476 CGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTC---T 7420 Query 110495 TAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTAC 110550 || || | | || ||||||| || ||||| ||||||| || | ||||| Sbjct 7419 TA-CGGCCCATGTTCTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAA 7361 Query 110551 ACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610 || |||| | ||| || || || || | | | ||| | || ||| Sbjct 7360 ACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCA 7301 Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCC 110670 || | ||||||||| | || |||||||| | || ||||||| |||||| || || Sbjct 7300 ACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACC 7241 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 ||||| | || ||||| || || || | || || | || ||| | ||||||||| Sbjct 7240 TCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGC 7181 Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGT 110784 || || |||| || | | || | |||| ||| |||| | |||||| | Sbjct 7180 TCAAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCAACATATCTG 7124 Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844 || ||| ||||| || | |||||||||| |||||| | ||| | || |||||||| Sbjct 7123 GCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCA 7064 Query 110845 CTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCAC 110904 ||| || | ||||||| || ||||| || | ||| |||||||| || | Sbjct 7063 GCAATGTAGGCTCCAGTGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTC 7004 Query 110905 TTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 ||| ||| | | ||| | ||| | | || |||||||||||||||| || ||| Sbjct 7003 TTAGAAATCATAGCGCA-AGTCT-TCAAAGTGTCATAAATACCATCAATGCTGTCCTCCT 6946 Query 110963 TGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022 | || | || || || || || || | || | | || || || ||| || |||| Sbjct 6945 TCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTG 6886 Query 111023 TAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGA 111080 | || | || || | || | ||| ||||||| |||||| || || | || | Sbjct 6885 TTGGAGAGGCGTGGGTAAA--GTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGC 6828 Query 111081 GGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 | || | |||||||||||||| ||||| ||||| | ||||| ||| || ||| Sbjct 6827 CTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTC 6768 Query 111141 GATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | | ||| ||||| | ||| | || || ||| |||||||||| || ||||| Sbjct 6767 GCAAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTA 6708 Query 111201 TCCAAAATCGAAATCACGATC 111221 | | | ||||||||| || Sbjct 6707 TTGGTAGTTGAAATCACGGTC 6687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588941036912200