Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 170 2e-37
>seq4538
Length=19519
Score = 170 bits (188), Expect = 2e-37
Identities = 1112/1761 (63%), Gaps = 81/1761 (5%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
|||||| || ||||| ||||| |||||| |||||||||||| ||||| | || ||||
Sbjct 8405 GTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGT 8346
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||| || ||||| ||||||||||| | | |||||||||| | || ||||
Sbjct 8345 ACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGG 8286
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACC-ATGA---GATCCTTCATCTCTTTCGACC 109675
| ||||| || || |||||| ||| | |||| | | |||||| | | ||||
Sbjct 8285 AACATTTTGGATTGATCCACCA----TCAGCGATGATTCGGTTCTTCATGTTGTCAGACC 8230
Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACC 109733
| || || | | || || | | ||| ||| |||||| || || || ||
Sbjct 8229 AAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGG--GTTGACAACTTGGAACTCTCC 8172
Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793
|||||| || || ||||||||| | || || || ||||| || || ||| ||
Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCC 8112
Query 109794 TAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850
|| ||||| | ||| | || || ||||| ||||| | ||| | |||||| || ||
Sbjct 8111 AAGAATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAG 8055
Query 109851 ACCCTTCG------TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAA 109904
||| | | ||| | | ||| || | || ||| || || | | ||
Sbjct 8054 ACCATGCTGGGCGATCTGTTGCT--TCAAGC-TAGC---CCAGTCCCAAAGGTCGGTAGG 8001
Query 109905 TTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTT 109964
| |||| || |||||| || |||||| | |||| | ||||| || || |
Sbjct 8000 T---GTCTTGCC---CCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTC 7947
Query 109965 GAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGC 110021
| ||||||| | || | || |||| |||| |||| || | | || ||
Sbjct 7946 ATATGTCTCGTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTC---AAAGCAGC 7890
Query 110022 ATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGG 110081
||||| || ||||||||||| || || | | | || |||| | ||||| ||
Sbjct 7889 GTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGG 7830
Query 110082 AAGACCACAAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGA 110139
||| | | | | || ||| |||| || ||||| |||||||| ||| |||| || |
Sbjct 7829 AAGGCGA-AGTGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTG 7772
Query 110140 TGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACC 110196
|| | || || || |||| || ||||| ||||| || || | |
Sbjct 7771 TGACGGAAATTGCTCTTTCTTGC---TTCTGGAACTGGGTAGTAGTTGATATCAATAATC 7715
Query 110197 CGATTGAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAACGT 110255
||| | ||||| ||| ||| | || || || || || | | | || | ||
Sbjct 7714 TTATTCAAGTTCTTGACAACAA-CTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGT 7656
Query 110256 TTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGT 110315
|||| | || |||||| | || ||||||| || || | |||||| || |
Sbjct 7655 GGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGAC 7596
Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375
|| ||| | ||| || | ||| ||||| |||| |||||| || ||| |||
Sbjct 7595 TTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACC 7536
Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434
| ||||||||| || | ||| | |||||| |||||||| ||||||||| | ||| | |
Sbjct 7535 AAGGTTCTTCTGGTTGCTCTTTCG-GTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTC 7477
Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT 110494
| || || ||||| | | |||||| | | ||| | | || |||||| |
Sbjct 7476 CGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTC---T 7420
Query 110495 TAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTAC 110550
|| || | | || ||||||| || ||||| ||||||| || | |||||
Sbjct 7419 TA-CGGCCCATGTTCTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAA 7361
Query 110551 ACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610
|| |||| | ||| || || || || | | | ||| | || |||
Sbjct 7360 ACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCA 7301
Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCC 110670
|| | ||||||||| | || |||||||| | || ||||||| |||||| || ||
Sbjct 7300 ACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACC 7241
Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730
||||| | || ||||| || || || | || || | || ||| | |||||||||
Sbjct 7240 TCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGC 7181
Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGT 110784
|| || |||| || | | || | |||| ||| |||| | |||||| |
Sbjct 7180 TCAAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCAACATATCTG 7124
Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844
|| ||| ||||| || | |||||||||| |||||| | ||| | || ||||||||
Sbjct 7123 GCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCA 7064
Query 110845 CTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCAC 110904
||| || | ||||||| || ||||| || | ||| |||||||| || |
Sbjct 7063 GCAATGTAGGCTCCAGTGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTC 7004
Query 110905 TTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962
||| ||| | | ||| | ||| | | || |||||||||||||||| || |||
Sbjct 7003 TTAGAAATCATAGCGCA-AGTCT-TCAAAGTGTCATAAATACCATCAATGCTGTCCTCCT 6946
Query 110963 TGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022
| || | || || || || || || | || | | || || || ||| || ||||
Sbjct 6945 TCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTG 6886
Query 111023 TAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGA 111080
| || | || || | || | ||| ||||||| |||||| || || | || |
Sbjct 6885 TTGGAGAGGCGTGGGTAAA--GTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGC 6828
Query 111081 GGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140
| || | |||||||||||||| ||||| ||||| | ||||| ||| || |||
Sbjct 6827 CTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTC 6768
Query 111141 GATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200
| | ||| ||||| | ||| | || || ||| |||||||||| || |||||
Sbjct 6767 GCAAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTA 6708
Query 111201 TCCAAAATCGAAATCACGATC 111221
| | | ||||||||| ||
Sbjct 6707 TTGGTAGTTGAAATCACGGTC 6687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588941036912200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |