Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4538 293 3e-74 seq678 91.5 2e-13 >seq4538 Length=19519 Score = 293 bits (324), Expect = 3e-74 Identities = 1183/1826 (65%), Gaps = 57/1826 (3%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| | | ||||||||||||||| || |||||||| || ||||| | | |||| Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGC 8447 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 ||| | || ||| ||| ||||| | |||| | ||||| |||| || Sbjct 8446 ATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 8387 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTGATTTCCCA 105759 |||||||| |||||| | || ||||| | | || | | | | | ||| ||||| Sbjct 8386 TCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGA-GATCTCCCA 8328 Query 105760 CACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC 105819 || || ||| ||| |||||||||| ||||||| | || | |||||| ||||| || Sbjct 8327 AACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCC 8268 Query 105820 CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATC 105879 || | || || | | |||||| | | |||||||| || || | || || Sbjct 8267 ACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTC 8208 Query 105880 ATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TA 105936 || | || ||| |||||||| |||||||| || || | | ||| || Sbjct 8207 CTTCAGAAGCCATGG--GTTGACAACTTGGAACTCTCCAGCAAGAACACGACG-AGAGTA 8151 Query 105937 GATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGG 105995 |||||| | || || || || |||||||| || |||||||| |||| ||| || Sbjct 8150 GATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGG 8092 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055 | |||||||| || || | | | |||||| |||||||| | | ||| ||| || Sbjct 8091 CAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTGCT 8032 Query 106056 TGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTT--CCCACATATCAAATTGAA 106112 | | | ||||||| | | | | ||| || || ||||||| ||| |||||| Sbjct 8031 TCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTC---TTGCCCCACATGTCATATTGAA 7975 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 || | || | ||| | || || || ||| ||||||| || | || |||| | |||| Sbjct 7974 GCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCA 7915 Query 106173 ATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 || || | | || | | | |||||||| || || ||||| || | || | Sbjct 7914 GCTCGACGGATGCAGTCAAAGCA-GCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGG 7856 Query 106232 TCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGA 106286 | ||| || || || || || | || || | || ||| |||| || | Sbjct 7855 TGCTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG-----CATCAGCAA 7801 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-A 106345 ||||||||||||| | | |||| |||||||| || | ||| ||||| || ||| | Sbjct 7800 GACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-TCTGGA 7742 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GAT 106404 || || || | || | ||||| | || | || ||| ||||| ||| | || Sbjct 7741 ACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAA-CTTGGCAGAC 7683 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 106464 || ||||| || | | ||| ||||| |||| ||||| ||||| ||||||| || Sbjct 7682 CTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGC 7623 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 | |||||||||||||||||| || ||||| | |||||| | ||| || || Sbjct 7622 AAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGT 7563 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 |||| |||||| || || || || | ||||| ||||| |||||| |||||| || Sbjct 7562 GCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGC 7503 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||||||||||||| | || | || ||||| ||||| | | |||||| | | ||| Sbjct 7502 ATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCA 7443 Query 106645 CA-CATCGGCGGCTGGTACAATGGCGT-TGGCCCGT-CCCTCCGCCTCGTACTTTGTGTA 106701 | | | | | || | ||| | | | ||||| | ||| |||||||| || || Sbjct 7442 AAGCTTTTGAGCCTTG-ACA--GTCTTACGGCCCATGTTCTCAGCCTCGTATTTCTCATA 7386 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | || |||||||| ||||| |||| | | ||| || || || || || | Sbjct 7385 CAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACAT 7326 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 | | ||| | | || ||||| ||||||||||| | ||||||||||| || | Sbjct 7325 CAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGC 7266 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | || ||||| | || ||||||| | || ||||| ||| | |||||||| Sbjct 7265 ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAA 7206 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 ||| | || ||| ||||||||||||||||| |||| || | || || ||||| Sbjct 7205 CTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC---AGGACGCTT 7149 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| | |||| ||||| | || ||| ||| || || |||||||| |||| ||| Sbjct 7148 GTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAAT 7089 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 || | || | || ||||| || ||| | | | |||| | | |||| Sbjct 7088 TCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCTGTGGAC 7029 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCA 107113 | | || ||||| ||||| ||| || || | ||||| | | | | | ||| || Sbjct 7028 ATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCA-AGT-CTTCAAAGTGTCA 6971 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || ||||| | || ||||||||| || |||| ||||| || || | || | | Sbjct 6970 TAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCT 6911 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 107231 ||| ||||||||| || || ||||| | ||||| | || || ||| ||||| Sbjct 6910 TGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTGCTGGACA 6853 Query 107232 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACAC 107291 || || ||| ||||| | | ||| ||||| | || ||||| || || | || |||| Sbjct 6852 TCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACAC 6793 Query 107292 GCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTC 107350 |||||| ||| | ||| || ||| | |||||||||| || | ||||| | || Sbjct 6792 GCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGATC 6733 Query 107351 TTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||| ||||| |||| || ||||| Sbjct 6732 -GCTCGAGGGTCTTGAATCCGAAGTA 6708 >seq678 Length=9679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 287/442 (65%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 116993 CAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 117052 |||| |||||||| |||||||||||||| || |||| ||||| ||||| ||||| | Sbjct 8415 CAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATGAAGTCGA 8356 Query 117053 ATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGAC 117111 |||| || | || ||| | || || | ||| || ||||| | Sbjct 8355 ATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGAAGGCGATCAGCA 8297 Query 117112 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGT 117171 || |||| ||||| | |||| ||| ||||||||| | |||| ||| || || Sbjct 8296 ACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGAGCACAAGGAAGA 8237 Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 117231 || || | |||| | | |||||||||||| ||||| | | || || |||| || Sbjct 8236 GCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACAGCTTGGACAGCA 8177 Query 117232 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGA 117291 | | | || | | | | |||||| ||||| || ||||||| Sbjct 8176 GCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAATCGGTGTGGAGA 8117 Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || ||||| || | || || ||||| || || | ||| ||||| |||||| Sbjct 8116 CCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATAAGACCACGCTTC 8057 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||||||||| | || | ||| || || |||||||||||||| ||| ||||| Sbjct 8056 TTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCAACAGCAGCAAAG 7997 Query 117412 GCAAAAAGGCGCTCGGCGAAGG 117433 |||| ||| || | || |||| Sbjct 7996 GCAACAAGACGTTGAGCAAAGG 7975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945777264760