Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 158 3e-33
seq1669 95.1 3e-14
seq4373 91.5 3e-13
>seq4739
Length=56954
Score = 158 bits (174), Expect = 3e-33
Identities = 144/182 (79%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| ||||| || ||||| |||||||||| ||| || | || || ||||||||
Sbjct 20599 GTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTG 20540
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | |||||||||||||||||||||||||| ||||| || || ||
Sbjct 20539 CTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 20480
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || ||||| || ||| || ||||| || |||| ||||| || ||
Sbjct 20479 GGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420
Query 195117 CA 195118
||
Sbjct 20419 CA 20418
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
|||||| | ||| | ||| || ||||| || ||||| || ||||| || | |||||||
Sbjct 20897 GAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCG 20838
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || || || || ||||| ||||||||||| ||||||||||| || ||||| || ||
Sbjct 20837 TCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTC 20778
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || ||||| || ||| ||||| ||||||||||| || ||| || || || ||
Sbjct 20777 CTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGT 20718
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
|| ||||| || |||||||| || ||||
Sbjct 20717 AATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 131 bits (144), Expect = 4e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||||||||||| ||||| || ||||| |||| |||| |||| ||||| || || ||
Sbjct 21109 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCGGCCATCCTCAAGTTG 21051
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| |||||||| || ||||| ||||| || || || || || || |||||||| || ||
Sbjct 21050 CTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTT 20991
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || || || || || || || ||| ||||| | || | |||||||| ||
Sbjct 20990 GGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGT 20931
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | |||||
Sbjct 20930 CAAGGTCTTAACGAAGATCTGCAT 20907
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||| ||| |||||||| ||||| ||| ||| || | ||||| || | ||
Sbjct 21338 GTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTG 21279
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| || | ||| ||||||||||| ||||| || || || || || || ||
Sbjct 21278 CTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTT 21219
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || ||||| ||||||||| || || || | |||| ||||| |||||
Sbjct 21218 GGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGT 21159
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || | |||||
Sbjct 21158 CAAAGTCTTGACAAAGATCTGCAT 21135
>seq1669
Length=79912
Score = 95.1 bits (104), Expect = 3e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
||||| || ||||| ||| || |||| || |||||||| || || || ||||||||
Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| ||||||||||| || || || || || ||||| || || || |||||| || ||
Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 7563
Query 195073 ATGGTGTCCGAA 195084
|| |||||||||
Sbjct 7564 ATTGTGTCCGAA 7575
>seq4373
Length=63444
Score = 91.5 bits (100), Expect = 3e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || ||||| ||||| || ||||| ||| || || | || ||||||
Sbjct 31450 ACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCG 31509
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| | || ||||||||||| || || || || ||||| ||
Sbjct 31510 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 31569
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084
|| || ||||| || || || ||||| |||
Sbjct 31570 ATCTTGGATTTGACATTGTCGATTGTGTCAGAA 31602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109414091858483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |