Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4739 158 3e-33 seq1669 95.1 3e-14 seq4373 91.5 3e-13 >seq4739 Length=56954 Score = 158 bits (174), Expect = 3e-33 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || ||||| |||||||||| ||| || | || || |||||||| Sbjct 20599 GTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTG 20540 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | |||||||||||||||||||||||||| ||||| || || || Sbjct 20539 CTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 20480 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| || ||| || ||||| || |||| ||||| || || Sbjct 20479 GGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420 Query 195117 CA 195118 || Sbjct 20419 CA 20418 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | ||| | ||| || ||||| || ||||| || ||||| || | ||||||| Sbjct 20897 GAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCG 20838 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || || ||||| ||||||||||| ||||||||||| || ||||| || || Sbjct 20837 TCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTC 20778 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| ||||| ||||||||||| || ||| || || || || Sbjct 20777 CTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGT 20718 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 || ||||| || |||||||| || |||| Sbjct 20717 AATGGTCTTGCCAGTCAAAGTCTTGACGA 20689 Score = 131 bits (144), Expect = 4e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||| ||||| || ||||| |||| |||| |||| ||||| || || || Sbjct 21109 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCGGCCATCCTCAAGTTG 21051 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| |||||||| || ||||| ||||| || || || || || || |||||||| || || Sbjct 21050 CTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTT 20991 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || || || || ||| ||||| | || | |||||||| || Sbjct 20990 GGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGT 20931 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 20930 CAAGGTCTTAACGAAGATCTGCAT 20907 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| |||||||| ||||| ||| ||| || | ||||| || | || Sbjct 21338 GTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTG 21279 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | ||| ||||||||||| ||||| || || || || || || || Sbjct 21278 CTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTT 21219 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||| ||||||||| || || || | |||| ||||| ||||| Sbjct 21218 GGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGT 21159 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | ||||| Sbjct 21158 CAAAGTCTTGACAAAGATCTGCAT 21135 >seq1669 Length=79912 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||| ||| || |||| || |||||||| || || || |||||||| Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || ||||||||||| || || || || || ||||| || || || |||||| || || Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 7563 Query 195073 ATGGTGTCCGAA 195084 || ||||||||| Sbjct 7564 ATTGTGTCCGAA 7575 >seq4373 Length=63444 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| ||||| || ||||| ||| || || | || |||||| Sbjct 31450 ACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCG 31509 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| | || ||||||||||| || || || || ||||| || Sbjct 31510 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 31569 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || || ||||| || || || ||||| ||| Sbjct 31570 ATCTTGGATTTGACATTGTCGATTGTGTCAGAA 31602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109414091858483