Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4739 87.8 1e-12 >seq4739 Length=56954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || || |||||||| ||||| |||| | || |||| ||| Sbjct 21343 ACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCC 21284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || || || || | ||| || |||||| | || | |||||||| || Sbjct 21283 AATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGG 21224 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCA--CCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || |||| ||| ||| | |||||| || | || || || Sbjct 21223 ATCTTGGACTTGAC--AT--TATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGT 21168 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||| ||||||||||||||| Sbjct 21167 CTTGCCTGTCAAAGTCTTGACAAAGATCTGCATA 21134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324614810714472