Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 188 8e-43
seq678 86.0 7e-12
>seq4538
Length=19519
Score = 188 bits (208), Expect = 8e-43
Identities = 500/753 (66%), Gaps = 18/753 (2%)
Strand=Plus/Minus
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
||| || || |||||||| ||||| ||||| |||| || || |||||| ||| | ||
Sbjct 7511 GTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAAT 7452
Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTA 48109
||| | ||||| | |||||| | ||| || | | || ||| |||||
Sbjct 7451 AGAGTACCAAAGCTTTTGAGCCTTGA---CAGTCTTACGGCCCATGTTCTCAGCCTCGTA 7395
Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169
||| ||| || |||||| ||||| || || || | | | || |||||||| || ||
Sbjct 7394 TTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTT 7335
Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229
||| |||||||||| ||| || | |||| || | |||| |||| |||||| ||
Sbjct 7334 AGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAAT 7275
Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288
||||||||| ||| || | ||| | | | | ||||| || || ||| || |
Sbjct 7274 CCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGA 7216
Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348
| ||||| || || | | |||||| |||||||| || | || || || | |||| |
Sbjct 7215 GGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAG 7156
Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408
| || || ||||| || ||||| | ||||||||| || ||||| |||||| | ||| |
Sbjct 7155 GACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAG 7096
Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC---TTA 48465
| ||||| || || || | || || || || | ||| || |||| | || | ||
Sbjct 7095 GAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTC 7036
Query 48466 TAT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524
| | || ||| || ||| |||||||| || | ||||| || | ||| || ||
Sbjct 7035 TGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTC 6980
Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584
| || |||||||| || || || || || || |||| | | || ||||| ||
Sbjct 6979 AAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAG 6920
Query 48585 ATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTC 48644
| ||| | || ||| || | | ||| | ||||||||| || || |||| ||||
Sbjct 6919 AGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTG 6860
Query 48645 TCTGATAACAATTTATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTAT 48703
|| | ||| || || || ||||| ||| || ||| | || | || ||||| |
Sbjct 6859 CTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-TGAATACCAAC 6801
Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTC 48736
|| |||||||| | ||||| ||| || | |||
Sbjct 6800 AGCAACACGCATAATCATATGTTGTGGACGTTC 6768
>seq678
Length=9679
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
||||||||||| || || |||||||| | ||||| || || || || || | |
Sbjct 8137 CATGCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGA 8078
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080
|||| ||| || || | || || ||||| || || || || || || ||| ||||||
Sbjct 8077 CCAGCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAG 8018
Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140
||||| || || || ||||| ||||| || | || || | ||| || || | ||
Sbjct 8017 ATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGG 7958
Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172
||||| | |||||||| |||||||| ||
Sbjct 7957 ATCCAACGAACAGCCCAATCGGCCTTCTTCTT 7926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562075431816360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |