Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4538 188 8e-43 seq678 86.0 7e-12 >seq4538 Length=19519 Score = 188 bits (208), Expect = 8e-43 Identities = 500/753 (66%), Gaps = 18/753 (2%) Strand=Plus/Minus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || || |||||||| ||||| ||||| |||| || || |||||| ||| | || Sbjct 7511 GTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAAT 7452 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTA 48109 ||| | ||||| | |||||| | ||| || | | || ||| ||||| Sbjct 7451 AGAGTACCAAAGCTTTTGAGCCTTGA---CAGTCTTACGGCCCATGTTCTCAGCCTCGTA 7395 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 ||| ||| || |||||| ||||| || || || | | | || |||||||| || || Sbjct 7394 TTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTT 7335 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 ||| |||||||||| ||| || | |||| || | |||| |||| |||||| || Sbjct 7334 AGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAAT 7275 Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||||||||| ||| || | ||| | | | | ||||| || || ||| || | Sbjct 7274 CCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGA 7216 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 | ||||| || || | | |||||| |||||||| || | || || || | |||| | Sbjct 7215 GGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAG 7156 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 | || || ||||| || ||||| | ||||||||| || ||||| |||||| | ||| | Sbjct 7155 GACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAG 7096 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC---TTA 48465 | ||||| || || || | || || || || | ||| || |||| | || | || Sbjct 7095 GAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTC 7036 Query 48466 TAT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524 | | || ||| || ||| |||||||| || | ||||| || | ||| || || Sbjct 7035 TGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTC 6980 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 | || |||||||| || || || || || || |||| | | || ||||| || Sbjct 6979 AAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAG 6920 Query 48585 ATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTC 48644 | ||| | || ||| || | | ||| | ||||||||| || || |||| |||| Sbjct 6919 AGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTG 6860 Query 48645 TCTGATAACAATTTATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTAT 48703 || | ||| || || || ||||| ||| || ||| | || | || ||||| | Sbjct 6859 CTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-TGAATACCAAC 6801 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTC 48736 || |||||||| | ||||| ||| || | ||| Sbjct 6800 AGCAACACGCATAATCATATGTTGTGGACGTTC 6768 >seq678 Length=9679 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 ||||||||||| || || |||||||| | ||||| || || || || || | | Sbjct 8137 CATGCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGA 8078 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||| ||| || || | || || ||||| || || || || || || ||| |||||| Sbjct 8077 CCAGCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAG 8018 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 ||||| || || || ||||| ||||| || | || || | ||| || || | || Sbjct 8017 ATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGG 7958 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||||| | |||||||| |||||||| || Sbjct 7957 ATCCAACGAACAGCCCAATCGGCCTTCTTCTT 7926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562075431816360