Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq167 138 9e-27
seq1393 93.3 3e-13
seq4295 91.5 1e-12
seq1114 86.0 5e-11
>seq167
Length=14118
Score = 138 bits (152), Expect = 9e-27
Identities = 360/547 (66%), Gaps = 4/547 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| | | | ||| | |
Sbjct 3020 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATCGA 2961
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|||| ||||| ||||| || || || ||| |||| || || || | || | |||||
Sbjct 2960 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCACA 2901
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| ||||||| | | | || ||||| ||||| | |||| | | || || ||||
Sbjct 2900 GATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCAAC 2841
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | || || || || ||||| || ||| ||| || || | || |||||
Sbjct 2840 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTCCAGGCC 2781
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||| | |||||| | | | |||||| || | ||| |
Sbjct 2780 GATATGAAGCACTTTCCTTTCACCGTCCTCGACCGAGGTGGAAAGCCAGTCGTCGAAATT 2721
Query 550292 AC--TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
||| | || | |||||||| |||||||| ||||||| || ||| | ||
Sbjct 2720 GAGTTCAAGGGCGAGAAG--AAACAATTCACACCAGAAGAAATTTCTTCCATGATCTTGG 2663
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| || |||| | | || || |||| ||||| | || | | || || | |
Sbjct 2662 TCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCA 2603
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || ||||| || |||| || ||||||||||||||||| || ||||| || || |
Sbjct 2602 CAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTTTAATCG 2543
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
|||| || || ||||||||||| ||||| || ||||| |||||||| |||| || || |
Sbjct 2542 CTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACGGTC 2483
Query 550530 TTGATAA 550536
| || ||
Sbjct 2482 TCGACAA 2476
Score = 127 bits (140), Expect = 2e-23
Identities = 454/704 (64%), Gaps = 13/704 (2%)
Strand=Plus/Minus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||||| |||||||| | || || ||||| |||| || ||| |||| || ||| |
Sbjct 2204 GCTCTCCGTCGTCTTCGCACCGCATGCGAGCGAGCTAAGCGAACTCTCTCCTCTTCCGCA 2145
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|||||| | |||||| | || || | || ||||| || || | | | || | || |
Sbjct 2144 CAAACCTCCATTGAAATTGACTCTCTCTTCGAGGGTATCGACTTTTACACCTCCATCACT 2085
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| |||| ||| ||||| | || || || || || || | | ||||| ||
Sbjct 2084 CGTGCCAGATTCGAAGAGCTCTGCCAGGACCTTTTCCGATCCACCACTACCCCAGTCGAC 2025
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | |||| | |||||||| |||||||| || || || || || ||||| ||
Sbjct 2024 CGTGTCCTCGCAGATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGA 1965
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191
|| ||||| | || || | ||| | ||| | | | | || || || || ||
Sbjct 1964 GGTTCTACCCGTATCCCAAGAATCC---AAAAGCTCATCACCGACTACTTTAACGGAAAG 1908
Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249
| ||| |||| | || || |||||||||||||| || ||||| || | || |
Sbjct 1907 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 1850
Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306
| || ||||| ||||| | || | | || | || || | ||| | || | ||||
Sbjct 1849 CTGCCATTCTCTCTGGTGACACTTCTTCCAAGTCCACCAACGAGATTCTTCTCCTCGATG 1790
Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366
| | || | || |||||| | || || | || ||| ||||| || || ||| |
Sbjct 1789 TCGCGCCATTGTCCCTTGGTATTGAGACTGCCGGTGGTCAAATGACCAAGCTCATCCCAA 1730
Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426
|||| || || ||||| || ||||| || || ||||| | || || || |||
Sbjct 1729 GAAACACCACCATTCCAACCAAGAAATCCGAGGTCTTCTCTACCTTCTCCGACAACCAAC 1670
Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486
||| ||| |||||| | || || || || | || ||| || || || || |
Sbjct 1669 CTGGTGTGCTTATTCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTT 1610
Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546
| |||| || | | ||||| || ||||| || ||||| || || |||||||| |
Sbjct 1609 TGGGTAAATTCGAGCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGG 1550
Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
| || || ||| | || ||||| ||||| |||| || |||||
Sbjct 1549 TCACCTTTGATGTTGACGCCAACGGAATCATGAACGTCTCTGCT 1506
>seq1393
Length=42225
Score = 93.3 bits (102), Expect = 3e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|| ||| ||||| |||||||||||||| || |||||| ||||| ||| ||||| ||
Sbjct 6575 AGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAATGGAAA 6516
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| ||||| | | || || || || |||||| ||| ||||| ||||| | || ||
Sbjct 6515 GGTCGAAATCCTGGTGAACGACCAGGGACACAGAATTACCCCATCATATGTCGCATTTAC 6456
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
|| ||| ||||||| || || ||||| | || ||| |||| || || | ||
Sbjct 6455 CGACGAGGAAAGACTAGTTGGAGACGCCGCAAAGAACCAGGCCGCTGGAAACCCAAAGAA 6396
Query 550171 TACTATTTTTGATG 550184
|| || |||||||
Sbjct 6395 CACCATCTTTGATG 6382
>seq4295
Length=64570
Score = 91.5 bits (100), Expect = 1e-12
Identities = 114/155 (74%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | ||||| || ||||| ||||| || || || ||| ||
Sbjct 62000 GTTGGGCAAGAAGGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 61941
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||| || |||||||| || || || ||||| ||||| || || |||||
Sbjct 61940 GCGTCAAGCTACCAAGGATGCTGGTGCCATCGCCGGTCTTAACGTTCTCCGAATCATCAA 61881
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| || || || ||||| | ||||| || ||||
Sbjct 61880 CGAGCCAACCGCCGCTGCTATCGCATACGGTCTTG 61846
>seq1114
Length=145283
Score = 86.0 bits (94), Expect = 5e-11
Identities = 112/154 (73%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || ||||| || || || || || ||||||||||| || || ||||
Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | || ||||| ||||||||||| | | | || || || || || ||||| |
Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551
|||| || || ||||| || || | || |||||
Sbjct 47676 TTGCGTACGGTCTTGAGAAGGATGAGGA-CAAGA 47708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029044851462010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |