Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq167 138 9e-27 seq1393 93.3 3e-13 seq4295 91.5 1e-12 seq1114 86.0 5e-11 >seq167 Length=14118 Score = 138 bits (152), Expect = 9e-27 Identities = 360/547 (66%), Gaps = 4/547 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | ||| | | Sbjct 3020 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATCGA 2961 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| ||||| || || || ||| |||| || || || | || | ||||| Sbjct 2960 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCACA 2901 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | | | || ||||| ||||| | |||| | | || || |||| Sbjct 2900 GATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCAAC 2841 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || || ||||| || ||| ||| || || | || ||||| Sbjct 2840 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTCCAGGCC 2781 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| | |||||| | | | |||||| || | ||| | Sbjct 2780 GATATGAAGCACTTTCCTTTCACCGTCCTCGACCGAGGTGGAAAGCCAGTCGTCGAAATT 2721 Query 550292 AC--TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 ||| | || | |||||||| |||||||| ||||||| || ||| | || Sbjct 2720 GAGTTCAAGGGCGAGAAG--AAACAATTCACACCAGAAGAAATTTCTTCCATGATCTTGG 2663 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | || |||| | | || || |||| ||||| | || | | || || | | Sbjct 2662 TCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCA 2603 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||| || ||||||||||||||||| || ||||| || || | Sbjct 2602 CAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTTTAATCG 2543 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| || || ||||||||||| ||||| || ||||| |||||||| |||| || || | Sbjct 2542 CTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACGGTC 2483 Query 550530 TTGATAA 550536 | || || Sbjct 2482 TCGACAA 2476 Score = 127 bits (140), Expect = 2e-23 Identities = 454/704 (64%), Gaps = 13/704 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| | || || ||||| |||| || ||| |||| || ||| | Sbjct 2204 GCTCTCCGTCGTCTTCGCACCGCATGCGAGCGAGCTAAGCGAACTCTCTCCTCTTCCGCA 2145 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| | |||||| | || || | || ||||| || || | | | || | || | Sbjct 2144 CAAACCTCCATTGAAATTGACTCTCTCTTCGAGGGTATCGACTTTTACACCTCCATCACT 2085 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | |||| ||| ||||| | || || || || || || | | ||||| || Sbjct 2084 CGTGCCAGATTCGAAGAGCTCTGCCAGGACCTTTTCCGATCCACCACTACCCCAGTCGAC 2025 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | |||| | |||||||| |||||||| || || || || || ||||| || Sbjct 2024 CGTGTCCTCGCAGATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGA 1965 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191 || ||||| | || || | ||| | ||| | | | | || || || || || Sbjct 1964 GGTTCTACCCGTATCCCAAGAATCC---AAAAGCTCATCACCGACTACTTTAACGGAAAG 1908 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | ||| |||| | || || |||||||||||||| || ||||| || | || | Sbjct 1907 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 1850 Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | || | | || | || || | ||| | || | |||| Sbjct 1849 CTGCCATTCTCTCTGGTGACACTTCTTCCAAGTCCACCAACGAGATTCTTCTCCTCGATG 1790 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | | || | || |||||| | || || | || ||| ||||| || || ||| | Sbjct 1789 TCGCGCCATTGTCCCTTGGTATTGAGACTGCCGGTGGTCAAATGACCAAGCTCATCCCAA 1730 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || || ||||| || ||||| || || ||||| | || || || ||| Sbjct 1729 GAAACACCACCATTCCAACCAAGAAATCCGAGGTCTTCTCTACCTTCTCCGACAACCAAC 1670 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| ||| |||||| | || || || || | || ||| || || || || | Sbjct 1669 CTGGTGTGCTTATTCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTT 1610 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | |||| || | | ||||| || ||||| || ||||| || || |||||||| | Sbjct 1609 TGGGTAAATTCGAGCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGG 1550 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | || || ||| | || ||||| ||||| |||| || ||||| Sbjct 1549 TCACCTTTGATGTTGACGCCAACGGAATCATGAACGTCTCTGCT 1506 >seq1393 Length=42225 Score = 93.3 bits (102), Expect = 3e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||| ||||| |||||||||||||| || |||||| ||||| ||| ||||| || Sbjct 6575 AGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAATGGAAA 6516 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| | | || || || || |||||| ||| ||||| ||||| | || || Sbjct 6515 GGTCGAAATCCTGGTGAACGACCAGGGACACAGAATTACCCCATCATATGTCGCATTTAC 6456 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||| ||||||| || || ||||| | || ||| |||| || || | || Sbjct 6455 CGACGAGGAAAGACTAGTTGGAGACGCCGCAAAGAACCAGGCCGCTGGAAACCCAAAGAA 6396 Query 550171 TACTATTTTTGATG 550184 || || ||||||| Sbjct 6395 CACCATCTTTGATG 6382 >seq4295 Length=64570 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | ||||| || ||||| ||||| || || || ||| || Sbjct 62000 GTTGGGCAAGAAGGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 61941 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||| || |||||||| || || || ||||| ||||| || || ||||| Sbjct 61940 GCGTCAAGCTACCAAGGATGCTGGTGCCATCGCCGGTCTTAACGTTCTCCGAATCATCAA 61881 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || || || || ||||| | ||||| || |||| Sbjct 61880 CGAGCCAACCGCCGCTGCTATCGCATACGGTCTTG 61846 >seq1114 Length=145283 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || ||||| || || || || || ||||||||||| || || |||| Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || ||||| ||||||||||| | | | || || || || || ||||| | Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 |||| || || ||||| || || | || ||||| Sbjct 47676 TTGCGTACGGTCTTGAGAAGGATGAGGA-CAAGA 47708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029044851462010