Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq678 113 8e-20
seq4538 111 3e-19
>seq678
Length=9679
Score = 113 bits (124), Expect = 8e-20
Identities = 342/520 (66%), Gaps = 19/520 (4%)
Strand=Plus/Minus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
||||| || | || | ||||| |||||||| ||||| || | | ||||||||||||
Sbjct 8425 TGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCC 8366
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958
|||||| ||| ||||||| || || ||| | ||| ||| | || ||
Sbjct 8365 ATGAAGTCGAATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGAAG 8307
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
| |||| || ||| |||||||||||| ||| | | |||||| || | ||| |
Sbjct 8306 GCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGAG- 8248
Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||| | || ||||| || | ||||||| ||| |||| || || || | | |
Sbjct 8247 CACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGA-CA 8189
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT------AGAGCATGC 48131
|||| |||| || || ||| || |||||||| || |||| | ||
Sbjct 8188 GCTT------GGACAGC-AGCCTTGCTTGGGC-GGTGCTTGAGATGGGAGAAGAGGAGGC 8137
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
| ||||| || |||| | || ||||| ||| ||| | | |||||||||| ||||
Sbjct 8136 ATGCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGAC 8077
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
||| ||| | || | || || | ||| || || | |||||||||||| |||||||
Sbjct 8076 CAGCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGA 8017
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || || || || || | | | || | || | |||||| ||
Sbjct 8016 TACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGA 7957
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
|||| || ||||| || ||||||||||||||||| ||
Sbjct 7956 TCCAACGAACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917
Score = 84.2 bits (92), Expect = 4e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||||||||| | ||||| || ||||||||| || |||||| | ||||||| |
Sbjct 7785 TCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGAATCGGGCCTCAGGAA 7726
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
| || ||||| || ||| | || || || ||||| ||||| || || || || ||||
Sbjct 7725 CTTGAACTTCATTGCTGAAGCGTTCAAGTAGGTTCTCGTTGACGATTCCGTCAGAGGCAG 7666
Query 48549 CAAAGAAGGCAAGGACATG 48567
||||||| || ||||| ||
Sbjct 7665 CAAAGAAAGCGAGGACGTG 7647
>seq4538
Length=19519
Score = 111 bits (122), Expect = 3e-19
Identities = 433/676 (64%), Gaps = 16/676 (2%)
Strand=Plus/Minus
Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554
|||| ||||||||||| || || | | | |||||| | ||||| |||||||||
Sbjct 7615 GCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGG 7556
Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614
||| || ||||||||| || ||||||| ||||| |||| |||| | |||||||
Sbjct 7555 TTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTG 7496
Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674
||||||||| | ||| |||||||| ||| | | || || | ||| || |
Sbjct 7495 TAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTT 7436
Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGCCTCGTACTGTTCGTAGAGCTC 213733
||||||| | | || || || | | | ||||||||| | || || | |
Sbjct 7435 TGAGCCTTGA----CAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTCTCATACAAAGC 7380
Query 213734 GTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793
| || || | || | || ||| || ||||| || ||||| | |
Sbjct 7379 CTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGT 7320
Query 213794 CCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853
|||||| || | | || | || |||||| | || || | ||| || || |||
Sbjct 7319 CCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAA 7260
Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913
|| || | || | ||| ||| ||| ||| || || || || || || |||||
Sbjct 7259 AAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAA 7200
Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970
|| || |||||||| ||||| | |||||||||||| || || || | |||| || ||
Sbjct 7199 GACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACC 7140
Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030
||| || || ||||| ||||||| | || || | || || | ||||||||
Sbjct 7139 CTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGA 7080
Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GA 214086
| |||||| || || || || || | || | ||| | || | || |||| |
Sbjct 7079 GTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCAC---GGATTCT-GTGGACATTAA 7024
Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146
| || || ||||| |||| ||| || ||||| ||||| | ||| ||| || || |
Sbjct 7023 GACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATAC 6964
Query 214147 CGGCCATGCTGTCATC 214162
| | |||||||| ||
Sbjct 6963 CATCAATGCTGTCCTC 6948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931477501884160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |