Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq678 113 8e-20 seq4538 111 3e-19 >seq678 Length=9679 Score = 113 bits (124), Expect = 8e-20 Identities = 342/520 (66%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 8425 TGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCC 8366 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958 |||||| ||| ||||||| || || ||| | ||| ||| | || || Sbjct 8365 ATGAAGTCGAATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGAAG 8307 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||| || ||| |||||||||||| ||| | | |||||| || | ||| | Sbjct 8306 GCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGAG- 8248 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||||| || | ||||||| ||| |||| || || || | | | Sbjct 8247 CACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGA-CA 8189 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT------AGAGCATGC 48131 |||| |||| || || ||| || |||||||| || |||| | || Sbjct 8188 GCTT------GGACAGC-AGCCTTGCTTGGGC-GGTGCTTGAGATGGGAGAAGAGGAGGC 8137 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | ||||| || |||| | || ||||| ||| ||| | | |||||||||| |||| Sbjct 8136 ATGCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGAC 8077 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||| ||| | || | || || | ||| || || | |||||||||||| ||||||| Sbjct 8076 CAGCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGA 8017 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | | | || | || | |||||| || Sbjct 8016 TACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGA 7957 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| || ||||| || ||||||||||||||||| || Sbjct 7956 TCCAACGAACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||||||||| || |||||| | ||||||| | Sbjct 7785 TCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGAATCGGGCCTCAGGAA 7726 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 | || ||||| || ||| | || || || ||||| ||||| || || || || |||| Sbjct 7725 CTTGAACTTCATTGCTGAAGCGTTCAAGTAGGTTCTCGTTGACGATTCCGTCAGAGGCAG 7666 Query 48549 CAAAGAAGGCAAGGACATG 48567 ||||||| || ||||| || Sbjct 7665 CAAAGAAAGCGAGGACGTG 7647 >seq4538 Length=19519 Score = 111 bits (122), Expect = 3e-19 Identities = 433/676 (64%), Gaps = 16/676 (2%) Strand=Plus/Minus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 |||| ||||||||||| || || | | | |||||| | ||||| ||||||||| Sbjct 7615 GCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACAGG 7556 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| || ||||||||| || ||||||| ||||| |||| |||| | ||||||| Sbjct 7555 TTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTG 7496 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 ||||||||| | ||| |||||||| ||| | | || || | ||| || | Sbjct 7495 TAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTT 7436 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGCCTCGTACTGTTCGTAGAGCTC 213733 ||||||| | | || || || | | | ||||||||| | || || | | Sbjct 7435 TGAGCCTTGA----CAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTCTCATACAAAGC 7380 Query 213734 GTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | || || | || | || ||| || ||||| || ||||| | | Sbjct 7379 CTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGT 7320 Query 213794 CCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 |||||| || | | || | || |||||| | || || | ||| || || ||| Sbjct 7319 CCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAA 7260 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 || || | || | ||| ||| ||| ||| || || || || || || ||||| Sbjct 7259 AAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAA 7200 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970 || || |||||||| ||||| | |||||||||||| || || || | |||| || || Sbjct 7199 GACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACC 7140 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 ||| || || ||||| ||||||| | || || | || || | |||||||| Sbjct 7139 CTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGA 7080 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GA 214086 | |||||| || || || || || | || | ||| | || | || |||| | Sbjct 7079 GTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCAC---GGATTCT-GTGGACATTAA 7024 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 | || || ||||| |||| ||| || ||||| ||||| | ||| ||| || || | Sbjct 7023 GACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATAC 6964 Query 214147 CGGCCATGCTGTCATC 214162 | | |||||||| || Sbjct 6963 CATCAATGCTGTCCTC 6948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931477501884160