Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 167 4e-36
seq678 113 8e-20
>seq4538
Length=19519
Score = 167 bits (184), Expect = 4e-36
Identities = 494/750 (66%), Gaps = 29/750 (4%)
Strand=Plus/Minus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
||||| || || |||||| || |||||| || |||| || || || ||| ||
Sbjct 7570 ATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGG 7511
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||| || |||||||||||||| || || || ||||| |||||| | |||||
Sbjct 7510 TTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATA 7451
Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGAC--TG----CACCCTCGGTCTTT 221932
|| ||| || | | || | || ||| | | | || || ||||| ||
Sbjct 7450 GAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391
Query 221933 TCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACAC 221992
|||||| | ||| | |||||| |||||||| | || ||| || ||||||
Sbjct 7390 TCATAC-------AAAGCCT--CAAACTCATCACCGTAAACGTCAGCCAAACCAGGACAC 7340
Query 221993 CTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCC 222052
| || ||||||| |||||| ||| | || || | || |||||| | ||
Sbjct 7339 TCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCT 7280
Query 222053 GGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTC 222112
|| ||||| || || | || ||||| | || || ||| ||| |||| ||| ||
Sbjct 7279 GGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTT 7220
Query 222113 CTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCG 222172
| || || | |||||||| | ||||||||||| ||||| || |||| ||| | |||
Sbjct 7219 CGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCA 7160
Query 222173 CCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAA 222230
|| || |||||||| |||||||||| || ||| ||| | | | |||||| | ||||
Sbjct 7159 CCAGGACGCTTGTTACCACCCTGAT-CAACAT-ATCTGGCGGTGTTGTTGAAAACTCGAA 7102
Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290
| | || || | ||||||||| ||||| || || |||||| || || ||| |
Sbjct 7101 GCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCAC 7042
Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346
|| | || | ||||| ||||||||||| |||| || || ||||| |||||
Sbjct 7041 ---GGATTCT-GTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAA 6986
Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406
|||| | |||||| || || || || ||||||||| | || | || |||||
Sbjct 6985 GTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACAT 6926
Query 222407 GACGACATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465
|| || | || | || ||| | | || || ||| || || ||| |||||| |||||
Sbjct 6925 GATGAGAGTTGTGCTTGTGGAGTACCA-GCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAA 6867
Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||| || ||||||| | ||| |||||
Sbjct 6866 GTATTTGCTGGACATCAAGTTGTAGGTCTC 6837
>seq678
Length=9679
Score = 113 bits (124), Expect = 8e-20
Identities = 162/226 (72%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873
||||||||| |||||| ||||| | |||||| | | || |||| ||||
Sbjct 7921 GCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTG 7980
Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933
| || || || |||||||||||||| ||||| ||||| || || || || || ||
Sbjct 7981 CTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCAT 8040
Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992
||||||| ||| | ||| || || ||| | || || |||||| ||||||||| |
Sbjct 8041 CCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCT-TACTTTCTCCAACGAGTTG 8099
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
||| | | |||||||||||||||| |||||||| ||||| ||||
Sbjct 8100 ATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCT 8145
Score = 91.5 bits (100), Expect = 3e-13
Identities = 179/261 (69%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | ||||||||||||||| | || |||||| || || |||||||||||
Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
||||||| | ||| |||| || |||| | | | ||||||| | || ||
Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAA--CGATGACGAGCGTTACTTCATCT 7644
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| | || |||||||| |||||||| || || || |||||||| || ||
Sbjct 7645 CCCACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGAAC 7704
Query 25652 GATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710
| |||| || ||||| | ||| | | |||||| | ||||| |||||||||||
Sbjct 7705 GCTTCAGCAATGAAGTTCAAGTTCCT-GAGGCCCGATTCTTCTATGGTTTCCAGATCATG 7763
Query 25711 ATCGAAAATGTGCACTCTGAG 25731
|| || || | |||||||||
Sbjct 7764 ATGGAGAACATTCACTCTGAG 7784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928789661450560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |