Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4538 167 4e-36 seq678 113 8e-20 >seq4538 Length=19519 Score = 167 bits (184), Expect = 4e-36 Identities = 494/750 (66%), Gaps = 29/750 (4%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || || |||||| || |||||| || |||| || || || ||| || Sbjct 7570 ATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGG 7511 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| || |||||||||||||| || || || ||||| |||||| | ||||| Sbjct 7510 TTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATA 7451 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGAC--TG----CACCCTCGGTCTTT 221932 || ||| || | | || | || ||| | | | || || ||||| || Sbjct 7450 GAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391 Query 221933 TCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACAC 221992 |||||| | ||| | |||||| |||||||| | || ||| || |||||| Sbjct 7390 TCATAC-------AAAGCCT--CAAACTCATCACCGTAAACGTCAGCCAAACCAGGACAC 7340 Query 221993 CTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCC 222052 | || ||||||| |||||| ||| | || || | || |||||| | || Sbjct 7339 TCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCT 7280 Query 222053 GGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTC 222112 || ||||| || || | || ||||| | || || ||| ||| |||| ||| || Sbjct 7279 GGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTT 7220 Query 222113 CTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCG 222172 | || || | |||||||| | ||||||||||| ||||| || |||| ||| | ||| Sbjct 7219 CGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCA 7160 Query 222173 CCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAA 222230 || || |||||||| |||||||||| || ||| ||| | | | |||||| | |||| Sbjct 7159 CCAGGACGCTTGTTACCACCCTGAT-CAACAT-ATCTGGCGGTGTTGTTGAAAACTCGAA 7102 Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290 | | || || | ||||||||| ||||| || || |||||| || || ||| | Sbjct 7101 GCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCAC 7042 Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 || | || | ||||| ||||||||||| |||| || || ||||| ||||| Sbjct 7041 ---GGATTCT-GTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAA 6986 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406 |||| | |||||| || || || || ||||||||| | || | || ||||| Sbjct 6985 GTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACAT 6926 Query 222407 GACGACATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || || | || | || ||| | | || || ||| || || ||| |||||| ||||| Sbjct 6925 GATGAGAGTTGTGCTTGTGGAGTACCA-GCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAA 6867 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| || ||||||| | ||| ||||| Sbjct 6866 GTATTTGCTGGACATCAAGTTGTAGGTCTC 6837 >seq678 Length=9679 Score = 113 bits (124), Expect = 8e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| ||||| | |||||| | | || |||| |||| Sbjct 7921 GCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTG 7980 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 | || || || |||||||||||||| ||||| ||||| || || || || || || Sbjct 7981 CTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCAT 8040 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992 ||||||| ||| | ||| || || ||| | || || |||||| ||||||||| | Sbjct 8041 CCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCT-TACTTTCTCCAACGAGTTG 8099 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||| | | |||||||||||||||| |||||||| ||||| |||| Sbjct 8100 ATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCT 8145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/261 (69%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || ||||||||||| Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | ||||||| | || || Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAA--CGATGACGAGCGTTACTTCATCT 7644 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || |||||||| |||||||| || || || |||||||| || || Sbjct 7645 CCCACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGAAC 7704 Query 25652 GATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| || ||||| | ||| | | |||||| | ||||| ||||||||||| Sbjct 7705 GCTTCAGCAATGAAGTTCAAGTTCCT-GAGGCCCGATTCTTCTATGGTTTCCAGATCATG 7763 Query 25711 ATCGAAAATGTGCACTCTGAG 25731 || || || | ||||||||| Sbjct 7764 ATGGAGAACATTCACTCTGAG 7784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928789661450560