Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq167 118 7e-21
seq1114 105 4e-17
seq4739 96.9 2e-14
>seq167
Length=14118
Score = 118 bits (130), Expect = 7e-21
Identities = 387/595 (65%), Gaps = 10/595 (2%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| || ||||| ||| | ||||| || ||| ||||| | | | | | ||| | |
Sbjct 3020 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATCGA 2961
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
| || || || ||||| ||||| || || |||| || || || | || | || ||
Sbjct 2960 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCACA 2901
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| ||||||| ||| || |||||||| || || | |||| || || || | ||
Sbjct 2900 GATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCAAC 2841
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAAT 474566
|| | || || || || | ||||| || || || || | || ||| |||||
Sbjct 2840 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGA--CCAGGAAGTCCAGG 2783
Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG 474626
| |||||| || | ||||| | || | | ||||| || ||| | |||
Sbjct 2782 CCGATATGAAGCACTTTCCTTTCACCGTCCTCGACCGAGGTGGAAAGCCAGTCGTCGAAA 2723
Query 474627 C--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| | || | || || | |||||||| |||| ||| |||||||||| ||| | ||
Sbjct 2722 TTGAGTTCAAG--GGCGAGAAGAAACAATTCACACCAGAAGAAATTTCTTCCATGATCTT 2665
Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743
| ||| |||| | | || || ||| | || ||||| | || | | || ||
Sbjct 2664 GGTCAAGATGAGAGAGACTGCTGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTCG 2606
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| || || ||||| || |||| ||||| ||||||||||| || || ||||| || ||
Sbjct 2605 TCACAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTTTAA 2546
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
| || ||||| || ||| | ||||| || || || || || || || || ||||||| |
Sbjct 2545 TCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACG 2486
Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918
|||| || ||||| ||| || ||| ||| | ||||||||| ||| ||
Sbjct 2485 GTCTCGACAAGAAGGTTGAGGGTGAGAGAAACGTTCTCATCTTTGATCTTGGTGG 2431
Score = 105 bits (116), Expect = 4e-17
Identities = 444/697 (64%), Gaps = 17/697 (2%)
Strand=Plus/Minus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
|||||| | || || || || || ||||||||| |||| || ||| | | ||||| |
Sbjct 2195 CGTCTTCGCACCGCATGCGAGCGAGCTAAGCGAACTCTCTCCTCTTCCGCACAAACCTCC 2136
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606
||||| |||| ||||| || || || || || | | | || || || | || | |
Sbjct 2135 ATTGAAATTGACTCTCTCTTCGAGGGTATCGACTTTTACACCTCCATCACTCGTGCCAGA 2076
Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666
|| ||||| | || || || || || || | | || || || | || |||
Sbjct 2075 TTCGAAGAGCTCTGCCAGGACCTTTTCCGATCCACCACTACCCCAGTCGACCGTGTCCTC 2016
Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726
|||| | || |||||||||| | || || || || || ||||| |||||||| ||
Sbjct 2015 GCAGATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGAGGTTCTACC 1956
Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTAA 475781
| || |||| ||| ||| ||| ||||| || ||||| || || || ||
Sbjct 1955 CGTATCCCAAGAATCC---AAAAGCT--CATCACCGACTACTTTAACGGAAAGGAGCCAA 1901
Query 475782 ATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839
| |||| | || |||||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 1900 AC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCCAT 1843
Query 475840 TTTATCAGGTCA---ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCC 475896
| | || ||| | || | || || | ||| | || | || || | ||
Sbjct 1842 TCTCTCTGGTGACACTTCTTCCAAGTCCACCAACGAGATTCTTCTCCTCGATGTCGCGCC 1783
Query 475897 ACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATAC 475956
| | || | ||| |||| || | || || ||||| || || || ||||| ||
Sbjct 1782 ATTGTCCCTTGGTATTGAGACTGCCGGTGGTCAAATGACCAAGCTCATCCCAAGAAACAC 1723
Query 475957 TCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGT 476016
| || ||| ||| ||||| | || || || || | || || || ||| | |||
Sbjct 1722 CACCATTCCAACCAAGAAATCCGAGGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGT 1663
Query 476017 AACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAAC 476076
|| ||| |||| || ||||| | || ||| || || || ||| | || |
Sbjct 1662 GCTTATTCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAA 1603
Query 476077 TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTT 476136
|| | || ||||| || ||||| || | || || || |||||||| || || ||
Sbjct 1602 ATTCGAGCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGGTCACCTT 1543
Query 476137 TGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|||| |||| || || || || | || || |||||
Sbjct 1542 TGATGTTGACGCCAACGGAATCATGAACGTCTCTGCT 1506
>seq1114
Length=145283
Score = 105 bits (116), Expect = 4e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || |||| |||||||| || || || ||||| ||||||||||| || || ||||
Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||| || |||||||||||| | | | |||| || ||||| ||||| || |
Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675
Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885
|||| || |||||||| ||| || |||||
Sbjct 47676 TTGCGTACGGTCTTGAGAAGGATGAGGACAA 47706
>seq4739
Length=56954
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/221 (70%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||||||||| ||||| | |||||| || ||| ||| || || || || | |
Sbjct 21128 ACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATG--TTGTAGTCGGACAAG 21071
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|||| | ||| ||||||||||| || || ||||| || || ||||||||||| || ||
Sbjct 21070 GTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATA 21011
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
|| ||||||||||| ||||| || ||| || |||||||| | | | | |||
Sbjct 21010 CCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCC 20951
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || || || | ||||||||||| || ||
Sbjct 20950 AAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTG 20910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267975492347852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |