Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq167 118 7e-21 seq1114 105 4e-17 seq4739 96.9 2e-14 >seq167 Length=14118 Score = 118 bits (130), Expect = 7e-21 Identities = 387/595 (65%), Gaps = 10/595 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | ||||| || ||| ||||| | | | | | ||| | | Sbjct 3020 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATCGA 2961 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 | || || || ||||| ||||| || || |||| || || || | || | || || Sbjct 2960 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCACA 2901 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||||| ||| || |||||||| || || | |||| || || || | || Sbjct 2900 GATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCAAC 2841 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAAT 474566 || | || || || || | ||||| || || || || | || ||| ||||| Sbjct 2840 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGA--CCAGGAAGTCCAGG 2783 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG 474626 | |||||| || | ||||| | || | | ||||| || ||| | ||| Sbjct 2782 CCGATATGAAGCACTTTCCTTTCACCGTCCTCGACCGAGGTGGAAAGCCAGTCGTCGAAA 2723 Query 474627 C--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | || | || || | |||||||| |||| ||| |||||||||| ||| | || Sbjct 2722 TTGAGTTCAAG--GGCGAGAAGAAACAATTCACACCAGAAGAAATTTCTTCCATGATCTT 2665 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | ||| |||| | | || || ||| | || ||||| | || | | || || Sbjct 2664 GGTCAAGATGAGAGAGACTGCTGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTCG 2606 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || ||||| || |||| ||||| ||||||||||| || || ||||| || || Sbjct 2605 TCACAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTTTAA 2546 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||||| || ||| | ||||| || || || || || || || || ||||||| | Sbjct 2545 TCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACG 2486 Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 |||| || ||||| ||| || ||| ||| | ||||||||| ||| || Sbjct 2485 GTCTCGACAAGAAGGTTGAGGGTGAGAGAAACGTTCTCATCTTTGATCTTGGTGG 2431 Score = 105 bits (116), Expect = 4e-17 Identities = 444/697 (64%), Gaps = 17/697 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 |||||| | || || || || || ||||||||| |||| || ||| | | ||||| | Sbjct 2195 CGTCTTCGCACCGCATGCGAGCGAGCTAAGCGAACTCTCTCCTCTTCCGCACAAACCTCC 2136 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 ||||| |||| ||||| || || || || || | | | || || || | || | | Sbjct 2135 ATTGAAATTGACTCTCTCTTCGAGGGTATCGACTTTTACACCTCCATCACTCGTGCCAGA 2076 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| | || || || || || || | | || || || | || ||| Sbjct 2075 TTCGAAGAGCTCTGCCAGGACCTTTTCCGATCCACCACTACCCCAGTCGACCGTGTCCTC 2016 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| | || |||||||||| | || || || || || ||||| |||||||| || Sbjct 2015 GCAGATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGAGGTTCTACC 1956 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTAA 475781 | || |||| ||| ||| ||| ||||| || ||||| || || || || Sbjct 1955 CGTATCCCAAGAATCC---AAAAGCT--CATCACCGACTACTTTAACGGAAAGGAGCCAA 1901 Query 475782 ATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839 | |||| | || |||||||| ||||||||||| || ||||| ||||| || || || Sbjct 1900 AC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCCAT 1843 Query 475840 TTTATCAGGTCA---ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCC 475896 | | || ||| | || | || || | ||| | || | || || | || Sbjct 1842 TCTCTCTGGTGACACTTCTTCCAAGTCCACCAACGAGATTCTTCTCCTCGATGTCGCGCC 1783 Query 475897 ACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATAC 475956 | | || | ||| |||| || | || || ||||| || || || ||||| || Sbjct 1782 ATTGTCCCTTGGTATTGAGACTGCCGGTGGTCAAATGACCAAGCTCATCCCAAGAAACAC 1723 Query 475957 TCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGT 476016 | || ||| ||| ||||| | || || || || | || || || ||| | ||| Sbjct 1722 CACCATTCCAACCAAGAAATCCGAGGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGT 1663 Query 476017 AACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAAC 476076 || ||| |||| || ||||| | || ||| || || || ||| | || | Sbjct 1662 GCTTATTCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAA 1603 Query 476077 TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTT 476136 || | || ||||| || ||||| || | || || || |||||||| || || || Sbjct 1602 ATTCGAGCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGGTCACCTT 1543 Query 476137 TGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||| |||| || || || || | || || ||||| Sbjct 1542 TGATGTTGACGCCAACGGAATCATGAACGTCTCTGCT 1506 >seq1114 Length=145283 Score = 105 bits (116), Expect = 4e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||| |||||||| || || || ||||| ||||||||||| || || |||| Sbjct 47556 ATGCTGTTGTTACAGTTCCAGCGTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATG 47615 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||| || |||||||||||| | | | |||| || ||||| ||||| || | Sbjct 47616 CTGGTCAAATCGCTGGTCTTAATGTTCTGAGAGTGGTTAACGAGCCAACCGCAGCTGCCC 47675 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885 |||| || |||||||| ||| || ||||| Sbjct 47676 TTGCGTACGGTCTTGAGAAGGATGAGGACAA 47706 >seq4739 Length=56954 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||||||||| ||||| | |||||| || ||| ||| || || || || | | Sbjct 21128 ACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATG--TTGTAGTCGGACAAG 21071 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| | ||| ||||||||||| || || ||||| || || ||||||||||| || || Sbjct 21070 GTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATA 21011 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || ||||||||||| ||||| || ||| || |||||||| | | | | ||| Sbjct 21010 CCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCC 20951 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || | ||||||||||| || || Sbjct 20950 AAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTG 20910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267975492347852