Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4384 131 2e-25 >seq4384 Length=63329 Score = 131 bits (144), Expect = 2e-25 Identities = 186/257 (72%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTT--TTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCAT 138219 ||||||| ||||||| ||| |||||||| ||||| || || || |||||||| |||| Sbjct 61569 AATGGTGCGAGATGTGACTTG--ACACCAATTGGACCAACACCTGGTCCTCCACCACCAT 61512 Query 138220 GTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATG 138279 | |||||||| ||||||||||| | || |||||||| ||||| |||||| |||| | Sbjct 61511 GAGGAATACAAAATGTCTTATGAAGGTTGAGATGACAGACATCAGCACCAATCTCACCAG 61452 Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339 || | || | ||| ||||| | || |||||||| | || ||||| ||||||| Sbjct 61451 GTGAGCACAATCCAATCTGAGCATTCATGTTCGCACCATCCATGTAAACCTGCCCACCAT 61392 Query 138340 TGTCATGAACGATCTTACATATCTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGAT 138398 | |||||| | | ||| | | | ||| | || ||||| |||||| || || Sbjct 61391 GTTGATGAACCAAATCACA-GGCAGCCTTGACCTCTGGCTCAAAAACACCAAAGGTGGAA 61333 Query 138399 GGATATGTAATCATAAT 138415 |||||||| ||||| || Sbjct 61332 GGATATGTGATCATGAT 61316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578964029207480