Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4538 284 1e-71 seq4003 102 1e-16 seq678 91.5 2e-13 >seq4538 Length=19519 Score = 284 bits (314), Expect = 1e-71 Identities = 1178/1826 (65%), Gaps = 57/1826 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | ||||| | || |||||||||| | Sbjct 6708 TACTTCGGATTCAAGACCCTCGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATTTG 6766 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| | ||||| || || | || || ||||| || | ||||| Sbjct 6767 CGAACGTCCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGA 6826 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | ||||| ||| || ||||||| ||| || || | ||||| | ||| Sbjct 6827 GGCTGCCATTGAGACCTACAACTTGATGTCCAGCAAA-TACTTT-ACCCACGCCTCTCCA 6884 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || || || ||||||||| ||| | | || | || || ||||| |||| || Sbjct 6885 ACACTTTTTGCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATG 6944 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAA 75440 ||||||||| || | ||||| |||| ||| | | | | | ||||| | || || | Sbjct 6945 AAGGAGGACAGCATTGATGGTATTTATGACACTTTGAAG-ACT-TGCGCTATGATTTCTA 7002 Query 75441 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 75500 || ||||| ||||| || | | |||| | | |||| | | | ||| Sbjct 7003 AGAACGCTGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTG 7062 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || ||||| || | || | || ||| |||| |||||||| || || ||| ||| | Sbjct 7063 CTGGTACAAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCG 7122 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGG 75614 | | ||||| |||| ||| || |||| | || | | || ||||| | | Sbjct 7123 CCAGATATGTTGATCA---GGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTG 7179 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAG 75674 | |||||||| || ||| || | ||||||||||| | ||| ||||| || | |||| Sbjct 7180 AGCCATGGCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAG 7239 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 ||| || | ||||| || | | || ||||||||||| | ||||||||||| | Sbjct 7240 AGGTCCGCGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTG 7299 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 |||| || | | ||| | | | || || || || || ||| | | |||| Sbjct 7300 TTGAAAAGAACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACG 7359 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 ||||| |||||||| || | || || || || | ||| | | | | Sbjct 7360 TTTACGGTGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCGTA 7419 Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||||| | || | | | | ||||| | |||||||| || | ||||| ||||| ||| Sbjct 7420 AGACTGT-CAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGA 7478 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | ||||| ||||||||||| || ||| ||||| ||||| ||||| | || Sbjct 7479 AACCCTTTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGT 7538 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| ||||| || || |||||||| ||| | |||||| | ||||| Sbjct 7539 ACCATCCGAAGCTCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTC 7598 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 || |||||||||||||||||| | || ||||||| ||||| ||||| |||| |||| Sbjct 7599 GCCGTTTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACT 7658 Query 76094 TTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | || ||||| || || | ||| ||||| ||| || | || | Sbjct 7659 TATGACTTCCAGAAGCTTCACGAGGTCTGCCAAG-TTGTTGTCAAGAACTTGAATAAGAT 7717 Query 76153 CATTGACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 ||||| | || | || || ||| ||| || ||||| ||| | || ||||||| Sbjct 7718 TATTGATATCAACTACTACCCAGTTCCAGA-AGCAAGAAAGAGCAATTTCCGTCACAGAC 7776 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG-----C 76266 | |||| | | |||||||||||||| || |||| ||| || | || || | Sbjct 7777 CAATTGCTCTTGGTGTTCAAGGTCTTGCTGATG-----CTTTCTTGGCACTTCGCCTTCC 7831 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 || || || || || ||| | | || | || ||||| || || |||||||| Sbjct 7832 TTTCGAGTCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGC 7891 Query 76327 ATCCCTGGAGGCGAGTTGT-GAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | | | || | || || |||| | |||| || | || ||||||| ||| | Sbjct 7892 -TGCTTTGACTGCATCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAG 7950 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTGAAACCAAGC- 76442 | || || || ||| | || | |||||| | ||| ||||||| || || ||| | | Sbjct 7951 GCTCACCTGCCTCCAAGGGCGAGCTTCAATATGACATGTGGGGCAA---GACACCTACCG 8007 Query 76443 TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 | | ||||||| | | ||| ||| ||| || | |||||||| |||||| Sbjct 8008 ACCTTTGGGACTGGGCTAGCTTGAAGCAACAGATCGCCCAGCATGGTCTTCGCAACAGTT 8067 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGC 76561 | | | || || |||||||| ||| ||| |||| |||||||| || |||||| Sbjct 8068 TGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGC 8126 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 || || ||||| || | ||||||||| | | || || || ||||| || Sbjct 8127 TTCGAGCCATATACTTCCAACATCTACTCTCGTCGTGTTCTTGCTGGAGAGTTCCAAGTT 8186 Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||||| || | || ||||| | || || || ||||| | | |||||| Sbjct 8187 GTCAACCCATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATGAAG 8246 Query 76682 GATC---TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 | | |||| | ||| ||||| || || |||||| | || | ||||||| ||| Sbjct 8247 AACCGAATCATCGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGA 8302 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATG 76795 ||||||| ||| ||| || || ||||| | ||| | | | | || | | ||| Sbjct 8303 TATCAAGGCTCTTTACAAGACTGTTTGGGAGATCTCACAACGTA--CTATCGTCCAGATG 8360 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 76855 || || ||||||||| |||||||||||| |||| ||||| | |||| | Sbjct 8361 GCTGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGAC 8420 Query 76856 CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACC 76915 ||||| ||| ||| || | ||||||| | | ||||| ||| ||||| || Sbjct 8421 CCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACT 8480 Query 76916 GGAATGTACTATCTCCGATCAAAGGC 76941 |||||||||||||||||| | | ||| Sbjct 8481 GGAATGTACTATCTCCGAACCATGGC 8506 >seq4003 Length=28829 Score = 102 bits (112), Expect = 1e-16 Identities = 295/447 (66%), Gaps = 18/447 (4%) Strand=Plus/Minus Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTT 175302 ||||||||| ||||||| || || ||||||||||| || ||||| ||| || Sbjct 23291 TTTCTCAAGACACCCGAGCAATTCGAACGACTGGGTGCCAAGATTCCTCGAGGAGCCATT 23232 Query 175303 CTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCA 175362 || | ||| || ||||| || || || | | || |||| || || |||||| Sbjct 23231 CTTTCTGGTCCACCCGGTACTGGTAAAACTTTGTTAGCAAAGGCCACAGCTGGAGAATCA 23172 Query 175363 AATGTCCCATTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGG 175421 || || ||| || || | | || | | ||||| |||||||||||||||||||| Sbjct 23171 GGCGTGCCTTTCTTC-AGCGTCAGTGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTGGG 23113 Query 175422 TGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTT 175481 ||| || ||||| |||||||| | || | ||||| || |||||| |||| Sbjct 23112 TGCTTCCAGAGTTCGGGATCTCTTCTCTCTGGCAAGGAAAAATACGCCTTGTATTATCTT 23053 Query 175482 CATTGATGAGATTGATGCGGTGGGCAA--------GCAACGCAGCGCTGGTGGTATGCCA 175533 ||||||||| ||||| || | || || | || || | ||| | ||| | Sbjct 23052 CATTGATGAAATTGACGCAATTGGAAAAGCTCGGGGAAAAGCCG-GCTCTTTCAATGGC- 22995 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | |||||| || |||| || ||||||| | | |||||||||||||| || | Sbjct 22994 GGAAATGATGAACGAGAGGCGACTCTTAATCAGATCTTGACCGAGATGGATGGTTT---C 22938 Query 175594 AATGAGACTG-GCA--TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGAC 175650 ||| | ||| ||| |||||||| |||| | || ||||| |||| | || || | Sbjct 22937 AATACGTCTGAGCAGGTTGTGGTTCTTGCTGGTACCAATCGATCGGATGTTCTCGACCAG 22878 Query 175651 GCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||| | | || || ||||||||| Sbjct 22877 GCCTTGACAAGACCCGGACGTTTTGAT 22851 >seq678 Length=9679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 287/442 (65%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| || | || ||| |||| ||||| ||| |||||||||||||| || || | Sbjct 7975 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTT 8034 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | || | ||||||||||||||| ||||| ||| | || || ||||| || | Sbjct 8035 TCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACG 8094 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | | || ||||| || |||||||||||| || ||||| |||||| | Sbjct 8095 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTTCTCCCATC 8154 Query 65249 TGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTG 65308 | | | || | | | || |||| || || | | ||||| |||||||||| Sbjct 8155 TCAAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTG 8214 Query 65309 AGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGA 65368 || | | |||| | || || || || ||| |||| | ||||||||| ||| || Sbjct 8215 AGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTTGA 8274 Query 65369 TGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCCACCC 65427 || | ||||| |||| || | ||||| || ||| | || || | Sbjct 8275 TGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGA-AG 8333 Query 65428 ATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACC 65487 ||| || | || ||||| ||||| ||||| ||||| |||| || |||||| Sbjct 8334 GTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACC 8393 Query 65488 AACTTCTTTGAGAAGCGAGTTG 65509 |||||||| |||||||| |||| Sbjct 8394 AACTTCTTCGAGAAGCGTGTTG 8415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596534186137120