Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 87.8 3e-12
>seq4739
Length=56954
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 155842 CATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGA 155901
|| ||||||| || |||||||| | ||||| || |||||||| || ||||| |
Sbjct 20415 CAGTGACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCA 20474
Query 155902 AAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCG 155961
| || || || || || |||||||| |||||||| |||||| | ||||| | ||||
Sbjct 20475 AGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCG 20534
Query 155962 GTAAGCAGCTCGAAGA 155977
| ||||||||||| ||
Sbjct 20535 GCAAGCAGCTCGAGGA 20550
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||| || ||||||||||| || || || || ||||| ||| ||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || || ||||| || || || || || || || |||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | |||| || || ||||| || || ||| | |||| || || || || |
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACA-- 21084
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| | || |||||||| ||
Sbjct 21085 ACATCCAAAAGGAGTCCACTCTTCATTTGGT 21115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731828554248400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |