Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 163 8e-35
seq678 118 3e-21
seq1536 95.1 4e-14
seq4684 93.3 1e-13
seq704 93.3 1e-13
seq4562 89.7 2e-12
>seq4538
Length=19519
Score = 163 bits (180), Expect = 8e-35
Identities = 724/1136 (64%), Gaps = 18/1136 (2%)
Strand=Plus/Minus
Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465
|| || | ||| ||||| |||| | | | ||| | || | | |||||||| | |||| |
Sbjct 7807 TCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTG-C 7749
Query 155466 TTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTT 155524
|||| | |||||| | || | ||||||||| ||||| || || | || || | |||
Sbjct 7748 TTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGAC-AACAACTT 7690
Query 155525 GGTT-ACGTCTGCTAATTTCACATAGTCAAATGTTT---TATCCTCATTTACAAACATAC 155580
|| || || | ||| ||||| | || | | |||| ||| | |
Sbjct 7689 GGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTG 7630
Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGT-CGCTGTATTCTACA 155639
|||| ||| || |||| ||| || || || | || | | | || | | ||| || |||
Sbjct 7629 GAAGAGCAAGTGATGCCAAATTGCAAACGGC-GACTTCATCTGGTGCACAGTACTCAACA 7571
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
||||| ||||||||| || || |||||| || | ||||||||||| || | |
Sbjct 7570 ATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGG 7511
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| || ||||||||||| || ||| | ||| |||| ||||| |||| || || |||||
Sbjct 7510 TTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATA 7451
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
||| || | | || || | ||| | || || | ||| ||||||
Sbjct 7450 GAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
||||| | | || ||||||||| ||| || ||||| |||| | |||
Sbjct 7390 TCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGG 7331
Query 155880 CAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936
|| | || | ||| || || || | | |||||| ||| |||| ||| |
Sbjct 7330 CACATCAATGTCCAGTCAAGGTTCTTTTCAA---CACGCTTCATGAATAAATCTGGAATC 7274
Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996
|||| |||||||||||| || | || ||| || | ||||| ||||| || ||
Sbjct 7273 CAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGG 7214
Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056
|| | ||| || | ||||| || |||||| || || || |||||| ||||
Sbjct 7213 TCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGA 7154
Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113
| |||| ||||||||||| ||||| | || || || ||||| || | |||||||||
Sbjct 7153 CGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGA 7094
Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173
| ||| || ||||| | || || || || ||| | | |||| | || | |
Sbjct 7093 ACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCTG 7034
Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233
|| | || || || |||||||| | |||||||| |||||| ||| | |||
Sbjct 7033 TGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTG 6974
Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293
| ||||||| ||||| || || | ||| | || | || || | |||
Sbjct 6973 TCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGT 6914
Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353
| | |||| || ||||| || ||||| || | || || |||| || || | |||
Sbjct 6913 GCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGAC 6854
Query 156354 ATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413
|| | | ||| ||||| | ||||| |||| |||||||||| | || ||
Sbjct 6853 ATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACA 6794
Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473
| ||| |||||| || ||||| || |||| ||||| | || || || ||||
Sbjct 6793 CGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGAT 6734
Query 156474 CGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529
|| || || || || || ||||| || | | |||||||||| ||| ||||
Sbjct 6733 CGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACAAT 6678
>seq678
Length=9679
Score = 118 bits (130), Expect = 3e-21
Identities = 158/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| || || ||||| | || |||||| || ||||||||||||||| | |
Sbjct 7915 TTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTA 7974
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||| ||||||| || ||||| || || || ||||| | |
Sbjct 7975 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTT 8034
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || |||||| | || ||||||||| || | |||| || ||| || ||||
Sbjct 8035 TCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACG 8094
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| | || || | ||||||| || |||||||| |||||
Sbjct 8095 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134
>seq1536
Length=41104
Score = 95.1 bits (104), Expect = 4e-14
Identities = 116/153 (76%), Gaps = 8/153 (5%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||||| || ||||||||| ||||| || |||||||||||||| | ||| ||| |
Sbjct 10871 TGGGCAATGGTCATACGAGATGGAATGGCGTGGGGATTGATGATAAGGTCCGGTACGATG 10812
Query 251899 CCATCAGCAG-TGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTT 251954
|| | |||| |||| ||||| || |||| || ||| || | ||||| || |||||
Sbjct 10811 CCCTG-GCAGGTGAAAGGCATGTC---TTCCATTCTATATGTGATACCAATGGTACCCTT 10756
Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| |||||| ||||||||
Sbjct 10755 CTGTCCGTGACGAGAAGCGAACTTGTCACCAAT 10723
>seq4684
Length=58313
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | |||||| |||||| |||| ||||| |||||| | ||||| ||
Sbjct 52396 AGAATTTCCTTTAGACGGGGGACACCAAGGGTGACGTT---CTTGGAAGACACACCGGCG 52340
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||||||||| || | ||| || | || || ||||| ||| || || |
Sbjct 52339 AAATGGAAAGTATTCAGTGTCATTTGCGTGGCAGGTTCCCCAATTGATTGAGCAGCGAGA 52280
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||| ||||||||||||||
Sbjct 52279 ACACCCACCATTTCTCCTGG 52260
Score = 91.5 bits (100), Expect = 4e-13
Identities = 218/323 (67%), Gaps = 10/323 (3%)
Strand=Plus/Minus
Query 302566 ATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTT 302625
|||| ||| |||| ||||| | ||| || ||||| ||||| ||| | || ||
Sbjct 51622 ATAACGTCCTCCAATGCCTTGACAAGACGTCGTTGAATGTAACCTGTTTCGGCGGTCTTC 51563
Query 302626 ACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGT 302685
||||| ||||| || ||||| |||||||| |||| || |||||||| | ||| ||
Sbjct 51562 ACAGCGGTATCGATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCCGTTGG- 51504
Query 302686 CGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
||| | || | || ||||| | ||||| || || | | || || |||| ||
Sbjct 51503 CGTCAAACCTCGAAGGTAGGAGTTTTCAACAAATCCTCTTGATTCTGGAGAATAATCATC 51444
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||| || || || || || || | || | | || |||| ||||||||||| |||||
Sbjct 51443 CTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCAAATGGAATACGCTTTCCTTCAAC 51384
Query 302805 GTTCTGCTGTCC--CAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGG 302860
| ||| || || || || || |||| || |||||||| | | || ||||| |
Sbjct 51383 GGACTGTTGGCCAACAAGCGCG--GTCATTTGAGAAATATTGATGGTTGAC--CCCTTTG 51328
Query 302861 AGCCAGCATTTACCATAATAACA 302883
|||||| || |||| || |||
Sbjct 51327 AGCCAGACTTGGCCATGATGACA 51305
>seq704
Length=48754
Score = 93.3 bits (102), Expect = 1e-13
Identities = 215/321 (67%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
||||| ||||||| ||| |||||||| | | | || || ||| | || |||
Sbjct 10615 CCAACGGCATCAAGTTCATCAATGAACACAATAGCAGGTGATTTTCCCTTGGCGGAGGCA 10674
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|||||||| | || || ||| |||| |||||| || | || | |||||||| |
Sbjct 10675 AATAATTCACGAACTCGCTTTGCGCCAACACCAACGTAGACCTCGTCGAATTCAGATCC- 10733
Query 289150 GATACTTGA--ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
| || ||| | ||| | || || || ||||| ||||||| |||| ||| ||||
Sbjct 10734 -AGACATGAAGAAGAACGGAACGCCAGCCTCTCCTGCAACTGCCCGGGCCAAAAGAGTCT 10792
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAG 289264
| || || ||||| || || | | || || |||||||| | ||| | || || ||
Sbjct 10793 TTCCAGTACCAGGAGGACCAACAAGGAGCACGCCCTTTGGAAGTTTACCACCGAGAGTAG 10852
Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324
| | || |||||| |||| || ||||| |||| || | || || | ||||||||
Sbjct 10853 A---GAACTTTTCAGGGTTCTTCAAGAATTCCACAAGATCTTGCAGCTCCTCTTTTGCCT 10909
Query 289325 CATCACATCCTGCTACATCAG 289345
| ||||| || |||||||
Sbjct 10910 CGTCACAACCATGGACATCAG 10930
>seq4562
Length=60599
Score = 89.7 bits (98), Expect = 2e-12
Identities = 128/178 (72%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 353958 GAATTCC-CGCTGATGAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGG 354016
||||||| || || ||||| || |||| ||||| || ||| ||| ||| |
Sbjct 15524 GAATTCCTCGTTG-TGAGAAATCATAACGACACCACCTTTGTAGTCACGAATAGCTACCG 15582
Query 354017 CGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGT 354076
| ||| ||||||| |||||||| || | |||||| |||||||||||||| | ||| | |
Sbjct 15583 CAAGACCACCAAGAGAGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACAAGGAGAT 15642
Query 354077 GCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
| || | ||||||| || |||||| || || || ||||| ||||| || || ||
Sbjct 15643 GGGGGTTGTTCCACATGGCACCAGCCAACACAACTTTGACCTTTTGTCCACCAGAAAG 15700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471728044958413
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