Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4538 163 8e-35 seq678 118 3e-21 seq1536 95.1 4e-14 seq4684 93.3 1e-13 seq704 93.3 1e-13 seq4562 89.7 2e-12 >seq4538 Length=19519 Score = 163 bits (180), Expect = 8e-35 Identities = 724/1136 (64%), Gaps = 18/1136 (2%) Strand=Plus/Minus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || || | ||| ||||| |||| | | | ||| | || | | |||||||| | |||| | Sbjct 7807 TCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTG-C 7749 Query 155466 TTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTT 155524 |||| | |||||| | || | ||||||||| ||||| || || | || || | ||| Sbjct 7748 TTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGAC-AACAACTT 7690 Query 155525 GGTT-ACGTCTGCTAATTTCACATAGTCAAATGTTT---TATCCTCATTTACAAACATAC 155580 || || || | ||| ||||| | || | | |||| ||| | | Sbjct 7689 GGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTG 7630 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGT-CGCTGTATTCTACA 155639 |||| ||| || |||| ||| || || || | || | | | || | | ||| || ||| Sbjct 7629 GAAGAGCAAGTGATGCCAAATTGCAAACGGC-GACTTCATCTGGTGCACAGTACTCAACA 7571 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 ||||| ||||||||| || || |||||| || | ||||||||||| || | | Sbjct 7570 ATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGG 7511 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || || ||||||||||| || ||| | ||| |||| ||||| |||| || || ||||| Sbjct 7510 TTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATA 7451 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | | || || | ||| | || || | ||| |||||| Sbjct 7450 GAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 ||||| | | || ||||||||| ||| || ||||| |||| | ||| Sbjct 7390 TCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGG 7331 Query 155880 CAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| || || || | | |||||| ||| |||| ||| | Sbjct 7330 CACATCAATGTCCAGTCAAGGTTCTTTTCAA---CACGCTTCATGAATAAATCTGGAATC 7274 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 |||| |||||||||||| || | || ||| || | ||||| ||||| || || Sbjct 7273 CAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGG 7214 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || | ||||| || |||||| || || || |||||| |||| Sbjct 7213 TCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGA 7154 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| ||||||||||| ||||| | || || || ||||| || | ||||||||| Sbjct 7153 CGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGA 7094 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | ||| || ||||| | || || || || ||| | | |||| | || | | Sbjct 7093 ACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCTG 7034 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 || | || || || |||||||| | |||||||| |||||| ||| | ||| Sbjct 7033 TGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTG 6974 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293 | ||||||| ||||| || || | ||| | || | || || | ||| Sbjct 6973 TCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGT 6914 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353 | | |||| || ||||| || ||||| || | || || |||| || || | ||| Sbjct 6913 GCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGAC 6854 Query 156354 ATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413 || | | ||| ||||| | ||||| |||| |||||||||| | || || Sbjct 6853 ATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACA 6794 Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473 | ||| |||||| || ||||| || |||| ||||| | || || || |||| Sbjct 6793 CGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGAT 6734 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 || || || || || || ||||| || | | |||||||||| ||| |||| Sbjct 6733 CGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACAAT 6678 >seq678 Length=9679 Score = 118 bits (130), Expect = 3e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | || |||||| || ||||||||||||||| | | Sbjct 7915 TTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTA 7974 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||| ||||||| || ||||| || || || ||||| | | Sbjct 7975 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTT 8034 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || |||||| | || ||||||||| || | |||| || ||| || |||| Sbjct 8035 TCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACG 8094 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | | || || | ||||||| || |||||||| ||||| Sbjct 8095 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134 >seq1536 Length=41104 Score = 95.1 bits (104), Expect = 4e-14 Identities = 116/153 (76%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||||||| ||||| || |||||||||||||| | ||| ||| | Sbjct 10871 TGGGCAATGGTCATACGAGATGGAATGGCGTGGGGATTGATGATAAGGTCCGGTACGATG 10812 Query 251899 CCATCAGCAG-TGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTT 251954 || | |||| |||| ||||| || |||| || ||| || | ||||| || ||||| Sbjct 10811 CCCTG-GCAGGTGAAAGGCATGTC---TTCCATTCTATATGTGATACCAATGGTACCCTT 10756 Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||| |||||||| Sbjct 10755 CTGTCCGTGACGAGAAGCGAACTTGTCACCAAT 10723 >seq4684 Length=58313 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||| |||||| |||| ||||| |||||| | ||||| || Sbjct 52396 AGAATTTCCTTTAGACGGGGGACACCAAGGGTGACGTT---CTTGGAAGACACACCGGCG 52340 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | ||| || | || || ||||| ||| || || | Sbjct 52339 AAATGGAAAGTATTCAGTGTCATTTGCGTGGCAGGTTCCCCAATTGATTGAGCAGCGAGA 52280 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| |||||||||||||| Sbjct 52279 ACACCCACCATTTCTCCTGG 52260 Score = 91.5 bits (100), Expect = 4e-13 Identities = 218/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 302566 ATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTT 302625 |||| ||| |||| ||||| | ||| || ||||| ||||| ||| | || || Sbjct 51622 ATAACGTCCTCCAATGCCTTGACAAGACGTCGTTGAATGTAACCTGTTTCGGCGGTCTTC 51563 Query 302626 ACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGT 302685 ||||| ||||| || ||||| |||||||| |||| || |||||||| | ||| || Sbjct 51562 ACAGCGGTATCGATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCCGTTGG- 51504 Query 302686 CGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| | || | || ||||| | ||||| || || | | || || |||| || Sbjct 51503 CGTCAAACCTCGAAGGTAGGAGTTTTCAACAAATCCTCTTGATTCTGGAGAATAATCATC 51444 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| || || || || || || | || | | || |||| ||||||||||| ||||| Sbjct 51443 CTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCAAATGGAATACGCTTTCCTTCAAC 51384 Query 302805 GTTCTGCTGTCC--CAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGG 302860 | ||| || || || || || |||| || |||||||| | | || ||||| | Sbjct 51383 GGACTGTTGGCCAACAAGCGCG--GTCATTTGAGAAATATTGATGGTTGAC--CCCTTTG 51328 Query 302861 AGCCAGCATTTACCATAATAACA 302883 |||||| || |||| || ||| Sbjct 51327 AGCCAGACTTGGCCATGATGACA 51305 >seq704 Length=48754 Score = 93.3 bits (102), Expect = 1e-13 Identities = 215/321 (67%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||| ||| |||||||| | | | || || ||| | || ||| Sbjct 10615 CCAACGGCATCAAGTTCATCAATGAACACAATAGCAGGTGATTTTCCCTTGGCGGAGGCA 10674 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||||||| | || || ||| |||| |||||| || | || | |||||||| | Sbjct 10675 AATAATTCACGAACTCGCTTTGCGCCAACACCAACGTAGACCTCGTCGAATTCAGATCC- 10733 Query 289150 GATACTTGA--ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || ||| | ||| | || || || ||||| ||||||| |||| ||| |||| Sbjct 10734 -AGACATGAAGAAGAACGGAACGCCAGCCTCTCCTGCAACTGCCCGGGCCAAAAGAGTCT 10792 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAG 289264 | || || ||||| || || | | || || |||||||| | ||| | || || || Sbjct 10793 TTCCAGTACCAGGAGGACCAACAAGGAGCACGCCCTTTGGAAGTTTACCACCGAGAGTAG 10852 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | | || |||||| |||| || ||||| |||| || | || || | |||||||| Sbjct 10853 A---GAACTTTTCAGGGTTCTTCAAGAATTCCACAAGATCTTGCAGCTCCTCTTTTGCCT 10909 Query 289325 CATCACATCCTGCTACATCAG 289345 | ||||| || ||||||| Sbjct 10910 CGTCACAACCATGGACATCAG 10930 >seq4562 Length=60599 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 353958 GAATTCC-CGCTGATGAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGG 354016 ||||||| || || ||||| || |||| ||||| || ||| ||| ||| | Sbjct 15524 GAATTCCTCGTTG-TGAGAAATCATAACGACACCACCTTTGTAGTCACGAATAGCTACCG 15582 Query 354017 CGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGT 354076 | ||| ||||||| |||||||| || | |||||| |||||||||||||| | ||| | | Sbjct 15583 CAAGACCACCAAGAGAGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACAAGGAGAT 15642 Query 354077 GCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | || | ||||||| || |||||| || || || ||||| ||||| || || || Sbjct 15643 GGGGGTTGTTCCACATGGCACCAGCCAACACAACTTTGACCTTTTGTCCACCAGAAAG 15700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471728044958413