Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1404 129 7e-24 seq678 93.3 5e-13 >seq1404 Length=42043 Score = 129 bits (142), Expect = 7e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||||||||||||||| || | ||| |||| |||||| | || ||||||||||| Sbjct 40928 CAACTACCTCGACATCAAGCCCCTCTTGGATGTTGGTTGCAAGACAGTTGCCAACATGAT 40987 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||| ||||||||||| ||||| || ||||||| Sbjct 40988 CAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACTTTCAACATCA 41031 >seq678 Length=9679 Score = 93.3 bits (102), Expect = 5e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||||||||| || | || ||||| Sbjct 8431 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATG 8372 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| |||||| ||| || ||||| || | Sbjct 8371 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGG 8312 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| || || || ||||||||||| || ||| | ||| |||||||| || | | Sbjct 8311 AGAAGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGG 8252 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||| | ||| ||||| || ||||| |||| Sbjct 8251 AGAGCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATG 8192 Query 868931 A 868931 | Sbjct 8191 A 8191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106749474820433