Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1404 129 7e-24
seq678 93.3 5e-13
>seq1404
Length=42043
Score = 129 bits (142), Expect = 7e-24
Identities = 91/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250
||||||||||||||||||||| || | ||| |||| |||||| | || |||||||||||
Sbjct 40928 CAACTACCTCGACATCAAGCCCCTCTTGGATGTTGGTTGCAAGACAGTTGCCAACATGAT 40987
Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 40988 CAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACTTTCAACATCA 41031
>seq678
Length=9679
Score = 93.3 bits (102), Expect = 5e-13
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||||||||| || | || |||||
Sbjct 8431 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATG 8372
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| |||||| ||| || ||||| || |
Sbjct 8371 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGG 8312
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| || || || ||||||||||| || ||| | ||| |||||||| || | |
Sbjct 8311 AGAAGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGG 8252
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| ||| ||||| | ||| ||||| || ||||| ||||
Sbjct 8251 AGAGCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATG 8192
Query 868931 A 868931
|
Sbjct 8191 A 8191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106749474820433
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |