Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4739 122 8e-23 seq4538 118 1e-21 >seq4739 Length=56954 Score = 122 bits (134), Expect = 8e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| |||||||| ||||||||||| | | || || | || | || || Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || ||||| || |||||||| |||||||| ||||| || Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | | || ||||| |||||||| ||||| || || || ||| Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCAC 20599 Query 24908 TTGGT 24912 ||||| Sbjct 20600 TTGGT 20604 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || | || || || || || || | ||||| ||| || || Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || || || |||||| Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || || || || || || |||||| ||| | |||| || || ||| Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGT 21115 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 || || || || ||||| ||||| || ||| | ||||||| | || |||| ||| | Sbjct 20703 ACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGACAACGTTAAGTCG 20762 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 || ||| || || || || || || || || || ||||||||| | ||||| || || || Sbjct 20763 AA-GATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTATCTTCGCTGGTAA 20821 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||| || ||||| ||| | || || || ||||| ||||||||||| ||||| || Sbjct 20822 ACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGAATCCACACTCCA 20881 Query 24907 CTTGGT 24912 |||||| Sbjct 20882 CTTGGT 20887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || |||||| | || || || | | Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || || || ||| Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || || || || || |||||||| | | | | || || ||| Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGCGACTACAAC 21314 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || ||||||||| | || | || ||||| Sbjct 21315 ATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGG 21361 >seq4538 Length=19519 Score = 118 bits (130), Expect = 1e-21 Identities = 442/683 (65%), Gaps = 15/683 (2%) Strand=Plus/Minus Query 139333 TCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCG 139392 |||||||| |||||| | | | |||||| || ||| ||||| | | ||| | | Sbjct 7369 TCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGG 7310 Query 139393 TTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGC 139452 ||| | || ||| ||||||| | ||| |||||||| | ||| | | | ||| || Sbjct 7309 TTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGG 7250 Query 139453 GCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAG 139510 || |||||| || ||| |||| | || |||||| ||||| || |||| Sbjct 7249 GCGCGGACCTCTTCCTTTCCGTGGTTC--TTTCGGAGGTCAAGGAACTCAAAGACATCAG 7192 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGA 139567 |||||||||| || || |||||||| | || || || ||| ||||| ||||| | Sbjct 7191 CGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAA 7132 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 | | || | | || ||||| || || | ||| || | | ||| | | |||||| Sbjct 7131 CATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGT 7072 Query 139628 TGGTGCTACGGATGG-GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCG 139686 | || | | ||| | || | | || |||| || ||||| | ||||| || Sbjct 7071 TTGTACCAGCAATGTAGGCTCCAGTG-GCACGGATTCTGTGGACATTAAGACCGATACCA 7013 Query 139687 CCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTG 139746 || | || || || | | ||||| || || || || ||||| |||||| Sbjct 7012 CCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTG 6953 Query 139747 TCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCA 139806 || |||| ||| || || || ||||| || ||||| | | || || || || ||| Sbjct 6952 TCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCA 6893 Query 139807 AACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGACATCAATTCGTACGTTTCGAT 139865 || || || ||| ||||| || || ||||| | |||||||| | ||| || || || Sbjct 6892 AAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTG-GACATCAAGTTGTAGGTCTCAAT 6834 Query 139866 GGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGAT 139925 ||| | |||||| ||||| ||||| |||| || ||||| | ||||||||| Sbjct 6833 GGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGG 6774 Query 139926 CCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAG 139983 |||||| | | ||| |||| ||||| | || ||| ||||||||| | Sbjct 6773 ACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGATCG--CTCGAGGGTCTTGAAT 6716 Query 139984 CCAAAGTACCTATAGTTGAAATC 140006 || ||||| ||||||||||| Sbjct 6715 CCGAAGTATTGGTAGTTGAAATC 6693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449870892953720