Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 122 8e-23
seq4538 118 1e-21
>seq4739
Length=56954
Score = 122 bits (134), Expect = 8e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|| ||||| |||||||| ||||||||||| | | || || | || | || ||
Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| ||||| || ||||| || |||||||| |||||||| ||||| ||
Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| | | | | || ||||| |||||||| ||||| || || || |||
Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCAC 20599
Query 24908 TTGGT 24912
|||||
Sbjct 20600 TTGGT 20604
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || | || || || || || || | ||||| ||| || ||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| || || || || || ||||||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | || || || || || || || |||||| ||| | |||| || || |||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| |||||||| || || || || |||||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGT 21115
Score = 98.7 bits (108), Expect = 9e-16
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786
|| || || || ||||| ||||| || ||| | ||||||| | || |||| ||| |
Sbjct 20703 ACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGACAACGTTAAGTCG 20762
Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846
|| ||| || || || || || || || || || ||||||||| | ||||| || || ||
Sbjct 20763 AA-GATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTATCTTCGCTGGTAA 20821
Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906
||| || ||||| ||| | || || || ||||| ||||||||||| ||||| ||
Sbjct 20822 ACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGAATCCACACTCCA 20881
Query 24907 CTTGGT 24912
||||||
Sbjct 20882 CTTGGT 20887
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | || || || || |||||| | || || || | |
Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || |||||||| || || || || || || || || |||
Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||| || || || || || |||||||| | | | | || || |||
Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGCGACTACAAC 21314
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || || ||||||||| | || | || |||||
Sbjct 21315 ATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGG 21361
>seq4538
Length=19519
Score = 118 bits (130), Expect = 1e-21
Identities = 442/683 (65%), Gaps = 15/683 (2%)
Strand=Plus/Minus
Query 139333 TCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCG 139392
|||||||| |||||| | | | |||||| || ||| ||||| | | ||| | |
Sbjct 7369 TCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGG 7310
Query 139393 TTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGC 139452
||| | || ||| ||||||| | ||| |||||||| | ||| | | | ||| ||
Sbjct 7309 TTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGG 7250
Query 139453 GCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAG 139510
|| |||||| || ||| |||| | || |||||| ||||| || ||||
Sbjct 7249 GCGCGGACCTCTTCCTTTCCGTGGTTC--TTTCGGAGGTCAAGGAACTCAAAGACATCAG 7192
Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGA 139567
|||||||||| || || |||||||| | || || || ||| ||||| ||||| |
Sbjct 7191 CGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAA 7132
Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627
| | || | | || ||||| || || | ||| || | | ||| | | ||||||
Sbjct 7131 CATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGT 7072
Query 139628 TGGTGCTACGGATGG-GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCG 139686
| || | | ||| | || | | || |||| || ||||| | ||||| ||
Sbjct 7071 TTGTACCAGCAATGTAGGCTCCAGTG-GCACGGATTCTGTGGACATTAAGACCGATACCA 7013
Query 139687 CCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTG 139746
|| | || || || | | ||||| || || || || ||||| ||||||
Sbjct 7012 CCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTG 6953
Query 139747 TCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCA 139806
|| |||| ||| || || || ||||| || ||||| | | || || || || |||
Sbjct 6952 TCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCA 6893
Query 139807 AACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGACATCAATTCGTACGTTTCGAT 139865
|| || || ||| ||||| || || ||||| | |||||||| | ||| || || ||
Sbjct 6892 AAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTG-GACATCAAGTTGTAGGTCTCAAT 6834
Query 139866 GGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGAT 139925
||| | |||||| ||||| ||||| |||| || ||||| | |||||||||
Sbjct 6833 GGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGG 6774
Query 139926 CCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAG 139983
|||||| | | ||| |||| ||||| | || ||| ||||||||| |
Sbjct 6773 ACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGATCG--CTCGAGGGTCTTGAAT 6716
Query 139984 CCAAAGTACCTATAGTTGAAATC 140006
|| ||||| |||||||||||
Sbjct 6715 CCGAAGTATTGGTAGTTGAAATC 6693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449870892953720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |