Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4739 104 2e-17 >seq4739 Length=56954 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 34743 AATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTA 34801 ||||||| |||||| | | | || |||| ||| | |||||||||||| |||||||| Sbjct 21370 AATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTG 21311 Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| ||| | || |||| |||| |||||| || ||||| |||| ||| || ||| Sbjct 21310 TAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGG 21251 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TC 34917 ||| | || | |||||||| || | || || ||||| || |||| || || Sbjct 21250 TCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGAC--AT--TATCAATTGTGTC 21195 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 21194 CGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||||||||| || || || ||| | || | || Sbjct 20607 AGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCC 20548 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| ||||| |||||| | || | || |||||||| Sbjct 20547 TCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTC 20489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325673949409631