Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq1536 86.0 2e-11 >seq1536 Length=41104 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/165 (73%), Gaps = 9/165 (5%) Strand=Plus/Minus Query 309684 CTCCATCAACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTC 309743 ||| ||||| | ||| || ||||||||||| |||||||| | || ||||||| || ||| Sbjct 10881 CTCGATCAAATGGGCAATGGTCATACGAGATGGAATGGCGTGGGGATTGATGATAAGGTC 10822 Query 309744 AGGTCTCATTCCGGTGATTGGGTTGAAAGGCATATCTTC--TTCAGGTACA-ATCAAACC 309800 ||| || || || || |||||||||| ||||| ||| || | | | ||| Sbjct 10821 CGGTACGATGCC-CTGGCAGG--TGAAAGGCATGTCTTCCATTC---TATATGTGATACC 10768 Query 309801 AATAGTTCCCTTTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 ||| || ||||| || |||| | ||||| |||||||||||||| Sbjct 10767 AATGGTACCCTTCTGTCCGTGACGAGAAGCGAACTTGTCACCAAT 10723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951855629067672