Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4739 120 2e-22 >seq4739 Length=56954 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| ||||| || ||||| ||||| || || | | ||| || Sbjct 21122 ACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCC 21063 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||| || | || | || || ||||| || || |||||||| || Sbjct 21062 ATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTT 21003 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | ||| || || ||| ||||| | ||| || Sbjct 21002 GTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGAT 20943 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| ||||| || |||||||| Sbjct 20942 TGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611 ||| ||||||||| | | ||| |||||||| || || ||| || ||||||||||| | Sbjct 21369 ATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGT 21310 Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671 | || || ||| ||| ||| || | ||| || ||||| | ||||||| || || | Sbjct 21309 AGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGT 21250 Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAA 29731 | || ||||||||||| || || || | || |||||| | || | ||||| ||| Sbjct 21249 CTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAG 21190 Query 29732 GTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || || || ||||| || || || || ||||| |||||||| Sbjct 21189 ACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| ||||| ||||| || |||| | || || || Sbjct 20890 AGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCC 20831 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || |||||||| ||||| | || | | ||| || ||||| ||||||||||| || || Sbjct 20830 TCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCC 20771 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || || | || | ||||| || ||| || || ||||| || || Sbjct 20770 TG-AATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGT 20712 Query 29754 TTTGCCAGTTAAGGTTTTAAC 29774 |||||||| || || || || Sbjct 20711 CTTGCCAGTCAAAGTCTTGAC 20691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385196904114609