Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 120 2e-22
>seq4739
Length=56954
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| ||||| || ||||| ||||| || || | | ||| ||
Sbjct 21122 ACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCC 21063
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| ||||| || | || | || || ||||| || || |||||||| ||
Sbjct 21062 ATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTT 21003
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || || ||| | || | ||| || || ||| ||||| | ||| ||
Sbjct 21002 GTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGAT 20943
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || ||||| ||||| ||||| || ||||||||
Sbjct 20942 TGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 113 bits (124), Expect = 3e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611
||| ||||||||| | | ||| |||||||| || || ||| || ||||||||||| |
Sbjct 21369 ATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGT 21310
Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671
| || || ||| ||| ||| || | ||| || ||||| | ||||||| || || |
Sbjct 21309 AGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGT 21250
Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAA 29731
| || ||||||||||| || || || | || |||||| | || | ||||| |||
Sbjct 21249 CTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAG 21190
Query 29732 GTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | || || || ||||| || || || || ||||| ||||||||
Sbjct 21189 ACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| ||||| || || |||||||| ||||| ||||| || |||| | || || ||
Sbjct 20890 AGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCC 20831
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| |||||||| ||||| | || | | ||| || ||||| ||||||||||| || ||
Sbjct 20830 TCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCC 20771
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| ||| || | || || | || | ||||| || ||| || || ||||| || ||
Sbjct 20770 TG-AATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGT 20712
Query 29754 TTTGCCAGTTAAGGTTTTAAC 29774
|||||||| || || || ||
Sbjct 20711 CTTGCCAGTCAAAGTCTTGAC 20691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385196904114609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |