Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1114 120 2e-21 seq167 116 3e-20 >seq1114 Length=145283 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||||||| ||||||| ||||| || ||||| || |||| | ||||| ||||||| Sbjct 47694 TTCTCAAGACCGTACGCAAGGGCAGCTGCGGTTGGCTCGTTAACCACTCTCAGAACATTA 47635 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 |||||||| ||| || ||||| || |||||||| | ||| |||||||| || || || Sbjct 47634 AGACCAGCGATTTGACCAGCATCCTTGGTGGCTTGACGTTGGGAATCGTTGAAGTACGCT 47575 Query 282455 GGAACAGTAATAACGGCAT 282473 ||||| |||| ||| |||| Sbjct 47574 GGAACTGTAACAACAGCAT 47556 >seq167 Length=14118 Score = 116 bits (128), Expect = 3e-20 Identities = 248/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || ||||| || | |||||| ||||| |||||||| ||||| || | | |||||| Sbjct 1522 ATTCCGTTGGCGTCAACATCAAAGGTGACCTCAATTTGTGGGACACCACGTGGTGCAGGT 1581 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 1582 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1641 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||| ||| || ||| ||| || || || | || | || || | Sbjct 1642 CCCTCGAAGACTTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 1701 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 ||||| || ||||| || |||||||| || | |||||||| |||||| || Sbjct 1702 GATTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCGGCA 1761 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-TTTGAAG--TTTT 281737 || || | |||||| || | || | |||||| | || | ||| | ||| | || Sbjct 1762 GTCTCAATACCAAGGGACAATGGCGCGACATCGAGGAGAAGAATCTCGTTGGTGGACTTG 1821 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | ||| | |||| ||||| || || || | |||||||| ||||||||||| ||| Sbjct 1822 GAAGAAGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 1881 Query 281798 TCAGGATT 281805 ||||| || Sbjct 1882 TCAGGGTT 1889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740397244169274