Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 120 2e-21
seq167 116 3e-20
>seq1114
Length=145283
Score = 120 bits (132), Expect = 2e-21
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| |||||||| ||||||| ||||| || ||||| || |||| | ||||| |||||||
Sbjct 47694 TTCTCAAGACCGTACGCAAGGGCAGCTGCGGTTGGCTCGTTAACCACTCTCAGAACATTA 47635
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|||||||| ||| || ||||| || |||||||| | ||| |||||||| || || ||
Sbjct 47634 AGACCAGCGATTTGACCAGCATCCTTGGTGGCTTGACGTTGGGAATCGTTGAAGTACGCT 47575
Query 282455 GGAACAGTAATAACGGCAT 282473
||||| |||| ||| ||||
Sbjct 47574 GGAACTGTAACAACAGCAT 47556
>seq167
Length=14118
Score = 116 bits (128), Expect = 3e-20
Identities = 248/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| || ||||| || | |||||| ||||| |||||||| ||||| || | | ||||||
Sbjct 1522 ATTCCGTTGGCGTCAACATCAAAGGTGACCTCAATTTGTGGGACACCACGTGGTGCAGGT 1581
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | ||| | |||| | || || || || ||| || || |||
Sbjct 1582 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1641
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||||| | ||| ||| || ||| ||| || || || | || | || || |
Sbjct 1642 CCCTCGAAGACTTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 1701
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
||||| || ||||| || |||||||| || | |||||||| |||||| ||
Sbjct 1702 GATTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCGGCA 1761
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-TTTGAAG--TTTT 281737
|| || | |||||| || | || | |||||| | || | ||| | ||| | ||
Sbjct 1762 GTCTCAATACCAAGGGACAATGGCGCGACATCGAGGAGAAGAATCTCGTTGGTGGACTTG 1821
Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| ||| | |||| ||||| || || || | |||||||| ||||||||||| |||
Sbjct 1822 GAAGAAGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 1881
Query 281798 TCAGGATT 281805
||||| ||
Sbjct 1882 TCAGGGTT 1889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740397244169274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |