Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4538 168 2e-36 seq4684 84.2 5e-11 >seq4538 Length=19519 Score = 168 bits (186), Expect = 2e-36 Identities = 465/703 (66%), Gaps = 25/703 (4%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || || ||||| || || || || | ||| | || ||| || ||||| |||| Sbjct 6708 TACTTCGGATTCAAGACCCTCGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTTGC 6767 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| || | |||||||| |||||||||| || || ||||| | Sbjct 6768 GAACGTCCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAG 6827 Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTC 110478 |||| ||||| || |||||| || ||| | || || || ||| Sbjct 6828 GCTGCCATTGAGACCTACAACTTGATGTCC--AGCAAATACTT---TACCCACGCCTCTC 6882 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || || ||| || || ||| || |||| | | || || || || | | | Sbjct 6883 CAACACTTTTTGCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACA 6942 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT---GCTCTTATTT 110595 | || || || ||||| ||||||||||| || || |||| || ||| | |||| Sbjct 6943 TGAAGGAGGACAGCATTGATGGTATTTATGACACT-TTGAAGA--CTTGCGCTATGATTT 6999 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 |||| ||| |||| || || ||| || | || || || || | | ||||| | | Sbjct 7000 CTAAGAACGCTGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACA 7059 Query 110656 TCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 | || | || || || |||| ||| ||||||| ||| | |||| |||||| || Sbjct 7060 TTGCTGGTACAAACGGAAACTCCAAC-GGAATTGTTCCTATGCTTCGAGTTTTCAACAAC 7118 Query 110715 ACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTC 110771 || || | |||||| |||| |||||||| | | ||| | ||||| ||||| || Sbjct 7119 ACCGCCAGATATGTTGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTT 7178 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 || || ||||| | ||| | ||||| ||| | || || || || || || ||| ||| Sbjct 7179 GAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAA 7238 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || | || |||||| | || ||||| | |||||| |||||||||||||||| ||| Sbjct 7239 GAGGTCCGCGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGT 7298 Query 110892 GTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949 ||| || | || | || ||| | | ||||| ||| | | ||||||| | ||| Sbjct 7299 GTTGAAAAGAA--CCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTG 7356 Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGA 110992 | || || || | |||||||| | | || || ||||| || Sbjct 7357 ACGTTTACGGTGATGAGTTTGAGGCTTTGTATGAGAAATACGA 7399 >seq4684 Length=58313 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||||| || ||||| |||||||||| ||| ||||||||| | Sbjct 50406 TTTAATCGTCAACCATCTCTCCATAAGGAATCTATGATGGGTCACCGAGTCAAAGTTATG 50465 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | || || ||| | ||| | || | | |||| || || || ||||||||| Sbjct 50466 CCTTATTCAACCTTCCGACTGAATTTGTCTGTTACTTCGCCGTACAACGCTGATTTTGAT 50525 Query 305456 GGAGATGAAATGAATATGCATGTACCTCA 305484 |||||||| |||||| |||| |||||||| Sbjct 50526 GGAGATGAGATGAATTTGCACGTACCTCA 50554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186740586520789