Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 98.7 7e-16
>seq4739
Length=56954
Score = 98.7 bits (108), Expect = 7e-16
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || |||||||| ||||| |||||||| ||| || || || |
Sbjct 21350 ACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACC 21291
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| |||||||| || || || |||||||| ||||| || ||| | || | ||| || ||
Sbjct 21290 ATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTT 21231
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGA 33712
|| || || || | ||| ||| ||||| || || || || | ||| |
Sbjct 21230 ATCCTGGATCTTGGACTTGA-CATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAA 21172
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || ||||| || || || |||||||||||||||
Sbjct 21171 TTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCATA 21134
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||| |||||| ||| ||||| |||||||| |||||
Sbjct 21134 ACCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 21075
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || || | ||| || || || ||||| | ||||| ||||| | ||
Sbjct 21074 CAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGG 21015
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || |||| ||| ||| | || ||| ||||| |
Sbjct 21014 GATACCCTCCTTGTCTTGGATCTTGGACTTCA-CATTGTCGATAGTATCGGAGGATTCAA 20956
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || || || || || ||||||||||||
Sbjct 20955 CTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCATA 20906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328684975126080
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |