Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 96.9 3e-15
seq4538 84.2 2e-11
>seq4739
Length=56954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || || || || || ||||| | ||||| | ||||| ||| || |
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||||||||| | || || || || || || |||||||| || || |||||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| ||||||||| || ||||| ||||| || |||| ||| |||| ||| ||||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTC--CGACTACA 21084
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383
| || ||||| || ||||| ||||||| ||
Sbjct 21085 ACATCCAAAAGGAGTCCACTCTTCATTTGGT 21115
>seq4538
Length=19519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 175/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 138142 ACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTA 138201
|| || || ||||| || || ||| ||||| ||||| || ||| || | ||| |
Sbjct 7030 ACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCA 6971
Query 138202 TAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGC 138261
|| || || | |||||||| |||| |||| || || |||| || || | ||| | |
Sbjct 6970 TAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTG-C 6912
Query 138262 ATTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCAT 138320
| | | | ||||| | || || || ||| ||||||||||| ||| | |||
Sbjct 6911 TTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACAT 6852
Query 138321 CAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACG 138380
||| | || | ||| || ||| ||| |||| |||||| ||||| || ||| |||||
Sbjct 6851 CAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACG 6792
Query 138381 CATCAGCATGTGTTGAGG 138398
||| | ||| ||||| ||
Sbjct 6791 CATAATCATATGTTGTGG 6774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445067978083680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |