Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4739 96.9 3e-15 seq4538 84.2 2e-11 >seq4739 Length=56954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || || ||||| | ||||| | ||||| ||| || | Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || || || || |||||||| || || ||||| Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||||||||| || ||||| ||||| || |||| ||| |||| ||| |||| Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTC--CGACTACA 21084 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || ||||| || ||||| ||||||| || Sbjct 21085 ACATCCAAAAGGAGTCCACTCTTCATTTGGT 21115 >seq4538 Length=19519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 138142 ACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTA 138201 || || || ||||| || || ||| ||||| ||||| || ||| || | ||| | Sbjct 7030 ACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCA 6971 Query 138202 TAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGC 138261 || || || | |||||||| |||| |||| || || |||| || || | ||| | | Sbjct 6970 TAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTG-C 6912 Query 138262 ATTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCAT 138320 | | | | ||||| | || || || ||| ||||||||||| ||| | ||| Sbjct 6911 TTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACAT 6852 Query 138321 CAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACG 138380 ||| | || | ||| || ||| ||| |||| |||||| ||||| || ||| ||||| Sbjct 6851 CAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACG 6792 Query 138381 CATCAGCATGTGTTGAGG 138398 ||| | ||| ||||| || Sbjct 6791 CATAATCATATGTTGTGG 6774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445067978083680