Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq678 127 3e-23 >seq678 Length=9679 Score = 127 bits (140), Expect = 3e-23 Identities = 222/320 (69%), Gaps = 5/320 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| || |||||| | || | Sbjct 7526 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATC 7584 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | ||||| ||| | ||| |||||||| | |||||| Sbjct 7585 TATCCAAGGATCTCAACGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCT 7644 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||| |||| || || ||| || || ||||| ||||||||| | Sbjct 7645 CCCACGTCCTCG-CTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGAA 7703 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || || || ||| | || ||||| || || || || || ||||||||| Sbjct 7704 CGCTTCAGCAATGAAGTTCAAGTTCCTGAGGCCCGATTCTTCTATGGTTTCCAGATCATG 7763 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| |||||||| |||||||| ||||| || || |||||| ||| ||| | | Sbjct 7764 ATGGAGAACATTCACTCTGAGACCTACTCCCTCCTTATTGATACCTACATCATGGAACAG 7823 Query 1456072 GTCGAGAAGGACCACCTCTT 1456091 | | ||| | ||||||| Sbjct 7824 GCACAAAAGACCTACCTCTT 7843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177353150221338