Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4739 104 2e-17 seq4373 98.7 1e-15 seq4538 91.5 1e-13 >seq4739 Length=56954 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| ||||||||||| ||| || ||| || ||| |||||||| Sbjct 20599 GTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTG 20540 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| || || || || || || |||||||| || || || || || Sbjct 20539 CTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 20480 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || || || || ||||||||||| || ||||| || Sbjct 20479 GGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || |||||||||||||| ||||||||||| Sbjct 20905 CCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAG 20846 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || ||||| || || || || | ||| || || || || || Sbjct 20845 AGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGA 20786 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || ||| | |||||||| ||||| || Sbjct 20785 ATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACC 20726 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 |||||||||||||| || || || ||||| || |||| Sbjct 20725 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| |||||||||||| | ||| | || || || || Sbjct 21109 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCAAGTTGC 21050 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||| ||||| | ||||| ||||| || || || || || || ||||| || || Sbjct 21049 TTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTG 20990 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | || ||||| ||||| || || | ||| || || || || || Sbjct 20989 GACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGTC 20930 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || ||||| Sbjct 20929 AAGGTCTTAACGAAGATCTGCAT 20907 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||| | ||| || ||| |||||||||||||||||||||| Sbjct 21362 TCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCT 21303 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || | || || || || |||||||| ||||| || || || || Sbjct 21302 AAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 21243 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || ||||| || | |||||| || || || || Sbjct 21242 AATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 21183 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || ||||| || || || || ||||| Sbjct 21182 CTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 >seq4373 Length=63444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | ||| || | |||||| || || || || |||||||| ||||||||||||| Sbjct 31431 TCCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCT 31490 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | ||| ||||| || || || || || ||||| ||||| || || || || Sbjct 31491 GAGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGG 31550 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || |||||| ||| | |||||| || || || || Sbjct 31551 GATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAAC 31610 Query 134666 GTCGAGA 134672 || ||| Sbjct 31611 CTCTAGA 31617 >seq4538 Length=19519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 533/848 (63%), Gaps = 15/848 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||| ||| | |||| || || || || |||||||| || | ||||| || ||| | Sbjct 6777 CAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCCATT 6836 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||||| ||| | ||||| ||||| || || || | ||||| Sbjct 6837 GAGACCTACAACTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGCT 6896 Query 7684 GCGGGCACAA-ACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || || || || || ||| | || || ||||| | | |||| || ||||| Sbjct 6897 GCTGGTACTCCACAAGCA-CAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACAG 6955 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||| || || ||||| |||| || |||||| | ||||| || ||| || || Sbjct 6956 CATTGATGGTATTTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTGG 7015 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG-CATCGTGTCCACCAACG 7861 || ||||| || || || | || |||| || |||| ||| | || |||| Sbjct 7016 TATCGGTCTTAATGTCCACAGAATCCGTGCCACTGG-AGCCTACATTGCTGGTACAAACG 7074 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 |||| ||| ||| | | || ||| | || || ||||| ||| | | || |||| | Sbjct 7075 GAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTG 7134 Query 7922 ACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 | ||||| || || ||| || || ||||||||| | ||||| |||||||| | Sbjct 7135 ATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 7194 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 | | | | | || | || || ||| || ||||| | || || | Sbjct 7195 ATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTG 7254 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098 |||| |||| | | ||| | || ||| | || |||| ||| ||| | || Sbjct 7255 ATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTG 7314 Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 | ||| | | |||||||| | || ||| || ||||||||||| | | Sbjct 7315 ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGT 7374 Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG----TGAAA 8214 |||| ||||| | ||||||| | | | | | | || | ||| | || Sbjct 7375 TTGAGGCTTTGTATGAGAAATACGA----GGCTGAGAACATGGGCCGTAAGACTGTCAAG 7430 Query 8215 GCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 || | | || | | ||| ||||| ||| | ||| ||||| | || | |||| Sbjct 7431 GCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCTTTCATG 7490 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 || ||||| || || |||||| || ||||| || | ||| | || ||||| | || Sbjct 7491 CTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATCCGAAGC 7550 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAAT 8394 ||| |||||| | || ||||| ||||| | || || || ||||| |||||||||||| Sbjct 7551 TCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTCGCCGTTTGCAAT 7610 Query 8395 CTAGCGTC 8402 | || || Sbjct 7611 TTGGCATC 7618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505368398287480