Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 104 2e-17
seq4373 98.7 1e-15
seq4538 91.5 1e-13
>seq4739
Length=56954
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || ||||| ||||||||||| ||| || ||| || ||| ||||||||
Sbjct 20599 GTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTG 20540
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || ||||| || || || || || || |||||||| || || || || ||
Sbjct 20539 CTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 20480
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || || || || ||||||||||| || ||||| ||
Sbjct 20479 GGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||||| | || | ||| || |||||||||||||| |||||||||||
Sbjct 20905 CCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAG 20846
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || || ||||| || || || || | ||| || || || || ||
Sbjct 20845 AGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGA 20786
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || || || ||| | |||||||| ||||| ||
Sbjct 20785 ATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACC 20726
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
|||||||||||||| || || || ||||| || ||||
Sbjct 20725 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || ||||| |||||||| |||||||||||| | ||| | || || || ||
Sbjct 21109 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCAAGTTGC 21050
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|||||||| ||||| | ||||| ||||| || || || || || || ||||| || ||
Sbjct 21049 TTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTG 20990
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || ||| | || ||||| ||||| || || | ||| || || || || ||
Sbjct 20989 GACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGTC 20930
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
|| || |||||||| || |||||
Sbjct 20929 AAGGTCTTAACGAAGATCTGCAT 20907
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
|||||| | || || | ||| | ||| || ||| ||||||||||||||||||||||
Sbjct 21362 TCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCT 21303
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| ||| || || || | || || || || |||||||| ||||| || || || ||
Sbjct 21302 AAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 21243
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || || || || || ||||| || | |||||| || || || ||
Sbjct 21242 AATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 21183
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||||| || || || || ||||| || || || || |||||
Sbjct 21182 CTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
>seq4373
Length=63444
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
|||||| | ||| || | |||||| || || || || |||||||| |||||||||||||
Sbjct 31431 TCCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCT 31490
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| ||| | ||| ||||| || || || || || ||||| ||||| || || || ||
Sbjct 31491 GAGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGG 31550
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || || || || || |||||| ||| | |||||| || || || ||
Sbjct 31551 GATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAAC 31610
Query 134666 GTCGAGA 134672
|| |||
Sbjct 31611 CTCTAGA 31617
>seq4538
Length=19519
Score = 91.5 bits (100), Expect = 1e-13
Identities = 533/848 (63%), Gaps = 15/848 (2%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||| ||| | |||| || || || || |||||||| || | ||||| || ||| |
Sbjct 6777 CAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCCATT 6836
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | ||||||| ||| | ||||| ||||| || || || | |||||
Sbjct 6837 GAGACCTACAACTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGCT 6896
Query 7684 GCGGGCACAA-ACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742
|| || || || || ||| | || || ||||| | | |||| || |||||
Sbjct 6897 GCTGGTACTCCACAAGCA-CAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACAG 6955
Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802
||| || || ||||| |||| || |||||| | ||||| || ||| || ||
Sbjct 6956 CATTGATGGTATTTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTGG 7015
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG-CATCGTGTCCACCAACG 7861
|| ||||| || || || | || |||| || |||| ||| | || ||||
Sbjct 7016 TATCGGTCTTAATGTCCACAGAATCCGTGCCACTGG-AGCCTACATTGCTGGTACAAACG 7074
Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921
|||| ||| ||| | | || ||| | || || ||||| ||| | | || |||| |
Sbjct 7075 GAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTG 7134
Query 7922 ACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978
| ||||| || || ||| || || ||||||||| | ||||| |||||||| |
Sbjct 7135 ATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 7194
Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038
| | | | | || | || || ||| || ||||| | || || |
Sbjct 7195 ATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTG 7254
Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098
|||| |||| | | ||| | || ||| | || |||| ||| ||| | ||
Sbjct 7255 ATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTG 7314
Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158
| ||| | | |||||||| | || ||| || ||||||||||| | |
Sbjct 7315 ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGT 7374
Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG----TGAAA 8214
|||| ||||| | ||||||| | | | | | | || | ||| | ||
Sbjct 7375 TTGAGGCTTTGTATGAGAAATACGA----GGCTGAGAACATGGGCCGTAAGACTGTCAAG 7430
Query 8215 GCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
|| | | || | | ||| ||||| ||| | ||| ||||| | || | ||||
Sbjct 7431 GCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCTTTCATG 7490
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|| ||||| || || |||||| || ||||| || | ||| | || ||||| | ||
Sbjct 7491 CTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATCCGAAGC 7550
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAAT 8394
||| |||||| | || ||||| ||||| | || || || ||||| ||||||||||||
Sbjct 7551 TCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTCGCCGTTTGCAAT 7610
Query 8395 CTAGCGTC 8402
| || ||
Sbjct 7611 TTGGCATC 7618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505368398287480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |