Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4538 291 1e-73 seq678 91.5 2e-13 >seq4538 Length=19519 Score = 291 bits (322), Expect = 1e-73 Identities = 1145/1781 (64%), Gaps = 45/1781 (3%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| |||| || || | | || || ||||||||||| || || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || |||||||||||| || | || |||| || || Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 8411 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| |||||| ||||| || || | ||| || ||||| | | Sbjct 8410 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGACG 8351 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 ||| | ||| | || ||||||| |||||| ||| ||||||||| |||| | | Sbjct 8350 ATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 8291 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | ||||| || ||||||||||| | || ||| ||||| || | ||| | Sbjct 8290 TTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGAC 8231 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | || || || || || | ||| || || ||| Sbjct 8230 CAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCA 8171 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | ||||| ||| || || |||||||| || | |||| || || Sbjct 8170 GCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCCA 8111 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||||||||| || |||||||||||||| || || | ||||| || | ||||||| Sbjct 8110 AGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCA 8051 Query 68851 TGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909 || ||| | | ||| || | ||| |||||||| || | ||| Sbjct 8050 TGCTGGGCGATCTGTTGCTTCAAGCTAGC-CCAGTCCCAAAGGTCGGTAGGTGTCTTGCC 7992 Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969 ||| | || ||||| || || || ||| ||| || | |||||| || || | Sbjct 7991 CCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGT 7932 Query 68970 TCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAA 69029 ||| | | || || || ||| || ||| ||| ||| ||||| || || Sbjct 7931 TCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAA 7872 Query 69030 AATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG--AATA 69087 ||| | | ||||| | | || ||| | ||||| ||| | || | || | Sbjct 7871 AATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGAAGGCG-AAGTGCCAAGA 7813 Query 69088 AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT 69147 || ||||| || | || ||||| |||| | | || ||||| || | ||| | ||| Sbjct 7812 AA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT-GCTCTT 7755 Query 69148 TCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTAC 69206 || |||||||||| || || || || ||||| ||||| ||||| | || ||| || Sbjct 7754 TCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAAC 7695 Query 69207 TACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTATA-ACAAACATA 69264 |||| || || | || || | || ||| || | | ||| | | |||||| Sbjct 7694 AACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATA 7635 Query 69265 TTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TA 69317 | || || | ||||| | ||| ||||| || || |||| | |||| || Sbjct 7634 TGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG---TGCACAGTA 7578 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 | | ||||| || || || || | | ||| || || || || | ||| || || Sbjct 7577 CTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCT 7518 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 |||| ||| ||||| |||||||| || || || || | || || || |||||| ||| Sbjct 7517 CTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTC 7458 Query 69438 GATAATAGATTTCCAAAC-----GACCCTAGCATTTATTACGGTC----TTGTAACGCTT 69488 || |||||| | ||||| || ||| | | |||||| | || | | || Sbjct 7457 GAGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTC 7398 Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 | ||| ||||| | |||| || || ||||| || |||| ||| |||| || Sbjct 7397 GTATTTCTCATAC-------AAAGCC--TCAAACTCATCACCGTAAACGTCAGCCAAACC 7347 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||||| || || || |||||||||| ||| || | | | ||| || ||||| || Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287 Query 69609 TAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 || ||| |||||||||||||| ||| || ||||| | || | ||||| ||||| Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 || ||| || || || ||||| | | ||||| |||||||| || || || || | Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | | || || || || || || |||||||| | |||||||| ||||| || | | Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 ||| ||||| |||| ||| || || || || || ||||| |||| ||| || ||| Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || || | | | ||||| || || || || | ||||| || | ||| | Sbjct 7047 TGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGC 6988 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 || ||||| |||||||| ||||| || ||||| || || |||||| | || |||| Sbjct 6987 AAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAAC 6928 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 | || | ||| ||| ||| || ||| ||| | ||| ||||| ||||| || | Sbjct 6927 ATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAA 6868 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA-TCCCACTGATGA 70086 | |||| || | || ||||| || ||||| || | || ||| | ||| | ||| Sbjct 6867 AGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-TGA 6809 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || || | || |||||||| | |||||| || || ||||| Sbjct 6808 ATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTC 6768 >seq678 Length=9679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 || || ||||| || || || || |||| ||| ||||||||||| || | |||||| ||| Sbjct 8101 ATCAACTCGTTGGAGAAAGTAAGACCAGCCATAAGACCACGCTTCTTCAACCAAAAGATG 8042 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 | || ||||| ||| ||||||||| || || || || ||||| |||||||| Sbjct 8041 GATGCGAAAGAGCCACTAAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAG 7989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686868023376360