Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq483 113 4e-20 >seq483 Length=11244 Score = 113 bits (124), Expect = 4e-20 Identities = 388/599 (65%), Gaps = 27/599 (5%) Strand=Plus/Plus Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293 || ||| |||||| |||||| || || ||| || || || || |||||||| | Sbjct 2772 GATATGGGAATTGGTGGATTGGATACTGAATTTGGTGCCATTTTCCGAAGAGCATTCGCT 2831 Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353 || ||| |||| || | | | ||| | | ||||| | | || || || || Sbjct 2832 TCTCGTATTTTCCCTCCTGGATTGATTGAGAAGTTGGGTATTCAGCACGTGAAGGGCATT 2891 Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTA 19413 || |||| ||| || || ||| ||||||||| || |||||| | || || | || | Sbjct 2892 TTACTTTTTGGACCTCCAGGTACTGGAAAAACCTTGATTGCGCGTCAAATTGGAAAGATG 2951 Query 19414 CTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470 | | ||| | |||| || || | || ||||| ||| |||| |||||||| || Sbjct 2952 TTGAACTCAAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTGAATAAATACGTT 3008 Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--ACAA--AA 19526 || || || ||||| || | || | || || || || || |||| |||| || Sbjct 3009 GGACAGTCAGAAGAGAACATTCGTAAACTCTTCGCAGATGCCGAGAAAGAGTACAAGGAA 3068 Query 19527 ACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCT 19585 | |||| | | ||||| | | || || || || | ||||||||||| || | | Sbjct 3069 A-----AGGGAGACGAAAGTGGTCTTCATATCATCATTTTCGATGAATTGGATGCTGTTT 3123 Query 19586 GTAAGCAAAGAGG---------TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATC 19636 | || || ||||| | ||||| || ||| || |||| ||||||||||| Sbjct 3124 GCAAACAGAGAGGAAGTGGAGCTGGTGGTGGAACTGGTGTTGGCGACAGTGTTGTCAATC 3183 Query 19637 AACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGA 19696 |||| || || ||| | || |||||| | || || || || || || ||||||| |||| Sbjct 3184 AACTTCTTTCCAAACTCGATGGTGTTGATCAGCTCAACAACATCTTGCTTATTGGAATGA 3243 Query 19697 CTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGA 19756 | || | || | || || || ||| | || || || || |||||| | | | Sbjct 3244 CCAACCGTAAAGATATGATTGATGATGCTTTACTGCGTCCTGGACGTTTGGAAGTTCACA 3303 Query 19757 TCGAAAT-TAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814 | || || | ||| || |||||| ||| || | ||||||| || || ||||| || Sbjct 3304 TGGAGATCTCGCTT-CCTGATGAAGCTGGCCGAGCCCAAATTTTGAAGATTCATACGTC 3361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432995867745