Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq483 113 4e-20
>seq483
Length=11244
Score = 113 bits (124), Expect = 4e-20
Identities = 388/599 (65%), Gaps = 27/599 (5%)
Strand=Plus/Plus
Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293
|| ||| |||||| |||||| || || ||| || || || || |||||||| |
Sbjct 2772 GATATGGGAATTGGTGGATTGGATACTGAATTTGGTGCCATTTTCCGAAGAGCATTCGCT 2831
Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353
|| ||| |||| || | | | ||| | | ||||| | | || || || ||
Sbjct 2832 TCTCGTATTTTCCCTCCTGGATTGATTGAGAAGTTGGGTATTCAGCACGTGAAGGGCATT 2891
Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTA 19413
|| |||| ||| || || ||| ||||||||| || |||||| | || || | || |
Sbjct 2892 TTACTTTTTGGACCTCCAGGTACTGGAAAAACCTTGATTGCGCGTCAAATTGGAAAGATG 2951
Query 19414 CTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470
| | ||| | |||| || || | || ||||| ||| |||| |||||||| ||
Sbjct 2952 TTGAACTCAAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTGAATAAATACGTT 3008
Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--ACAA--AA 19526
|| || || ||||| || | || | || || || || || |||| |||| ||
Sbjct 3009 GGACAGTCAGAAGAGAACATTCGTAAACTCTTCGCAGATGCCGAGAAAGAGTACAAGGAA 3068
Query 19527 ACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCT 19585
| |||| | | ||||| | | || || || || | ||||||||||| || | |
Sbjct 3069 A-----AGGGAGACGAAAGTGGTCTTCATATCATCATTTTCGATGAATTGGATGCTGTTT 3123
Query 19586 GTAAGCAAAGAGG---------TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATC 19636
| || || ||||| | ||||| || ||| || |||| |||||||||||
Sbjct 3124 GCAAACAGAGAGGAAGTGGAGCTGGTGGTGGAACTGGTGTTGGCGACAGTGTTGTCAATC 3183
Query 19637 AACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGA 19696
|||| || || ||| | || |||||| | || || || || || || ||||||| ||||
Sbjct 3184 AACTTCTTTCCAAACTCGATGGTGTTGATCAGCTCAACAACATCTTGCTTATTGGAATGA 3243
Query 19697 CTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGA 19756
| || | || | || || || ||| | || || || || |||||| | | |
Sbjct 3244 CCAACCGTAAAGATATGATTGATGATGCTTTACTGCGTCCTGGACGTTTGGAAGTTCACA 3303
Query 19757 TCGAAAT-TAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814
| || || | ||| || |||||| ||| || | ||||||| || || ||||| ||
Sbjct 3304 TGGAGATCTCGCTT-CCTGATGAAGCTGGCCGAGCCCAAATTTTGAAGATTCATACGTC 3361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397432995867745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |