Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4739 111 1e-19 seq1669 82.4 6e-11 >seq4739 Length=56954 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | || || || ||||| || ||||||||| || | | || | || || Sbjct 21116 TACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTC 21057 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || || || || ||| ||||||| ||||||||||| || || | |||||| || || Sbjct 21056 AAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTG 20997 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| |||| | || | ||| || | || ||||||||| | ||| || | || Sbjct 20996 GATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTT 20937 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || ||||| |||||| Sbjct 20936 TCCAGTCAAGGTCTTAACGAAGATCTGCATA 20906 Score = 100 bits (110), Expect = 2e-16 Identities = 167/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 27010 cATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068 |||||| |||| ||||| || | || | ||||| || | || || |||||||| Sbjct 21373 CATAATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATG 21314 Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||||||||| | | | || | || || | || ||||| ||| |||| | |||||| Sbjct 21313 TTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGT 21254 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || || || | |||||| ||||| ||||||| || | | || | ||||| Sbjct 21253 TGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCC 21194 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||||| |||| || || | ||||| |||| ||| || |||||||| |||||| Sbjct 21193 GAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCATA 21134 >seq1669 Length=79912 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 ||||| || ||||||||||| | | | || |||||||||| ||||| |||||| | || Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||||| ||||| || | ||||| || || ||||||| Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 7548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424909805460888