Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 111 1e-19
seq1669 82.4 6e-11
>seq4739
Length=56954
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097
||||||||| | || || || ||||| || ||||||||| || | | || | || ||
Sbjct 21116 TACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTC 21057
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
|| || || || ||| ||||||| ||||||||||| || || | |||||| || ||
Sbjct 21056 AAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTG 20997
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||||||| |||| | || | ||| || | || ||||||||| | ||| || | ||
Sbjct 20996 GATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTT 20937
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| |||| || || || ||||| ||||||
Sbjct 20936 TCCAGTCAAGGTCTTAACGAAGATCTGCATA 20906
Score = 100 bits (110), Expect = 2e-16
Identities = 167/240 (70%), Gaps = 1/240 (0%)
Strand=Plus/Minus
Query 27010 cATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068
|||||| |||| ||||| || | || | ||||| || | || || ||||||||
Sbjct 21373 CATAATCATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATG 21314
Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128
||||||||||| | | | || | || || | || ||||| ||| |||| | ||||||
Sbjct 21313 TTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGT 21254
Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188
|| || || || | |||||| ||||| ||||||| || | | || | |||||
Sbjct 21253 TGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCC 21194
Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| | ||||| |||| || || | ||||| |||| ||| || |||||||| ||||||
Sbjct 21193 GAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCATA 21134
>seq1669
Length=79912
Score = 82.4 bits (90), Expect = 6e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119
||||| || ||||||||||| | | | || |||||||||| ||||| |||||| | ||
Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||||| ||||| || | ||||| || || |||||||
Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 7548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424909805460888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |