Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 282 5e-71
seq4003 105 8e-18
seq678 95.1 2e-14
>seq4538
Length=19519
Score = 282 bits (312), Expect = 5e-71
Identities = 1186/1833 (65%), Gaps = 71/1833 (4%)
Strand=Plus/Minus
Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCA---TGCGTACATA 110410
||| | | ||||||||||||||| || |||||||| || ||||| |||| | |
Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAA---A 8450
Query 110411 TGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTT 110470
|||||| | || ||| ||| ||||| | |||| || |||||| |||| |
Sbjct 8449 TGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGAT 8390
Query 110471 TGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTT 110528
|| |||||||| || || | || ||||| | | || | | | | | | | || |
Sbjct 8389 TGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGT--TGTGAGATCT 8332
Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588
||||||| || || ||| |||||||||| ||||||| | || | ||| ||||| |
Sbjct 8331 CCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTG 8272
Query 110589 AACCCCCCGCCTTCACC-ATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644
| || || ||| | |||| | | |||||| | | ||||| || || || |
Sbjct 8271 ATCCACCA----TCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCA 8216
Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704
||||| || | || |||||||| ||||| || || || | |
Sbjct 8215 ACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGA 8156
Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGT 110763
||||||||| | || ||||| || |||||||| || |||||||| |||| |||
Sbjct 8155 GAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGT 8097
Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823
||| |||||||| || || | | | |||||| |||||||| | || ||| |
Sbjct 8096 ACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTG 8037
Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTT--CCCACATGTCAAA 110880
|| ||| | | ||||||| | | | | ||| || || ||||||||||| |
Sbjct 8036 TTGCTTCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTC---TTGCCCCACATGTCATA 7980
Query 110881 CTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940
|||||| | || | ||| || || || || ||| | || || || | || |||| |
Sbjct 7979 TTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTT 7920
Query 110941 AGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999
|||| || || | | || | | | |||||||| || || ||||| || | |
Sbjct 7919 TGCCAGCTCGACGGATGCAGTCAAAGCA-GCGTGATAGATTGTCTCAAAAATTTGGATGT 7861
Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATC 111054
| | | ||| || || || || || | || || | || ||| ||||
Sbjct 7860 TGAGGTGCTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG-----CATC 7806
Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114
|| |||||||||||||| | | |||| |||||||| || | ||| ||||| || |
Sbjct 7805 AGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-T 7747
Query 111115 CTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173
|| ||| || || | || | ||||| | || | || ||| ||||| ||| |
Sbjct 7746 CTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAA-CTTGG 7688
Query 111174 T-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232
|| || ||||| || | | ||| ||||| |||| ||||| ||||| |||||
Sbjct 7687 CAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGA 7628
Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292
|| || | |||||||||||||||||| || ||||| | |||||| | |||
Sbjct 7627 AGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATC 7568
Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352
|| || || | |||||| || || || || | ||||| ||||| ||||| ||||
Sbjct 7567 TCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTG 7508
Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412
|| |||||||||||||||||| | || | || ||||| ||||| | || ||||||||
Sbjct 7507 CAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAG 7448
Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGT-TGGCCCGT-CCCTCCGCCTCGTACTTT 111469
| ||||| | | | | || | ||| | | | ||||| | ||| |||||||| ||
Sbjct 7447 TACCAAAGCTTTTGAGCCTTG-ACA--GTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391
Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529
|| | || |||||||| ||||| |||| | | ||| || || || ||
Sbjct 7390 TCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGG 7331
Query 111530 CAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587
|| | | | ||| | | | ||| ||||| ||||||||||| | ||||||||||
Sbjct 7330 CACATCAATGTCCA--GTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCC 7273
Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647
| || | | || ||||| | || ||||||| | || ||||| ||| | |
Sbjct 7272 AAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGT 7213
Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707
|||||||||| | || ||| ||||||||||||||||| |||| || | || ||
Sbjct 7212 CAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC---AG 7156
Query 111708 GACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761
||||| ||| | |||| ||||| | || ||| ||| || || |||||||| |
Sbjct 7155 GACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAG 7096
Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821
||| ||| || | || | || ||||| || ||| | | | |||| | |
Sbjct 7095 GAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTC 7036
Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAG 111879
|||| | | || ||||| ||||| ||| || || | ||||| | | | | |
Sbjct 7035 TGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCA-AGT-CTTCAA 6978
Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939
||| |||| ||||| | || ||||||||| || |||| ||||| || || |
Sbjct 6977 AGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAG 6918
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
|| | | ||| ||||||||| || || ||||| | ||||| | || || |||
Sbjct 6917 TTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTG 6860
Query 112000 --GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057
||||||| || ||| ||||| | | ||| ||||| | || ||||| || || |
Sbjct 6859 CTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACA 6800
Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117
|| || ||||| | ||| | ||||| ||| | |||||||||| || | |||
Sbjct 6799 GCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGA 6740
Query 112118 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| | || ||| ||||| |||| || |||||
Sbjct 6739 TATGATC-GCTCGAGGGTCTTGAATCCGAAGTA 6708
>seq4003
Length=28829
Score = 105 bits (116), Expect = 8e-18
Identities = 296/447 (66%), Gaps = 18/447 (4%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
||||||||| || || | | ||| | || || | |||| ||||| || | ||
Sbjct 22851 ATCAAAACGTCCGGGTCTTGTCAAGGCCTGGTCGAGAACATCCGATCGATTGGTACCAGC 22910
Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568
|| |||||||| ||| ||| | |||| || |||||||||||||| | | |||||
Sbjct 22911 AAGAACCACAACCTGCTCAGACGTATTG---AAACCATCCATCTCGGTCAAGATCTGATT 22967
Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC-------- 11620
|| || |||| ||||||||| | | ||| | ||| | || || |
Sbjct 22968 AAGAGTCGCCTCTCGTTCATCATTTCC-GCCATTGAAAGAGC-CGGCTTTTCCCCGAGCT 23025
Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680
|| || | || ||||| ||||||||||||| |||||| || ||||| | || |
Sbjct 23026 TTTCCAATTGCGTCAATTTCATCAATGAAGATAATACAAGGCGTATTTTTCCTTGCCAGA 23085
Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740
|||||||| ||||| || ||||||||||||||||||||||| ||||| | |
Sbjct 23086 GAGAAGAGATCCCGAACTCTGGAAGCACCCACACCAACAAACATCTCTACAAACTCAGAA 23145
Query 11741 GCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799
|| | | || || ||| || || |||||| || || |||| || | | ||
Sbjct 23146 CCACTGACGCT-GAAGAAAGGCACGCCTGATTCTCCAGCTGTGGCCTTTGCTAACAAAGT 23204
Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCC 11859
|| || ||||| || ||| | |||| ||| ||||| || ||||||||||| ||
Sbjct 23205 TTTACCAGTACCGGGTGGACCAGAAAGAATGGCTCCTCGAGGAATCTTGGCACCCAGTCG 23264
Query 11860 AAAATATCTCTCGGGTTGCTTGAGAAA 11886
|| ||||||| |||||||||
Sbjct 23265 TTCGAATTGCTCGGGTGTCTTGAGAAA 23291
>seq678
Length=9679
Score = 95.1 bits (104), Expect = 2e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || |||||||||||| || ||||| || | || || ||||| |||||
Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
| ||| ||||| ||||||||||||||| | || | ||| || || |||||||||
Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818
||||| ||| ||||| |||| ||| |||| || ||||
Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627994718450400
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