Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4538 282 5e-71 seq4003 105 8e-18 seq678 95.1 2e-14 >seq4538 Length=19519 Score = 282 bits (312), Expect = 5e-71 Identities = 1186/1833 (65%), Gaps = 71/1833 (4%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCA---TGCGTACATA 110410 ||| | | ||||||||||||||| || |||||||| || ||||| |||| | | Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAA---A 8450 Query 110411 TGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTT 110470 |||||| | || ||| ||| ||||| | |||| || |||||| |||| | Sbjct 8449 TGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGAT 8390 Query 110471 TGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTT 110528 || |||||||| || || | || ||||| | | || | | | | | | | || | Sbjct 8389 TGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGT--TGTGAGATCT 8332 Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588 ||||||| || || ||| |||||||||| ||||||| | || | ||| ||||| | Sbjct 8331 CCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTG 8272 Query 110589 AACCCCCCGCCTTCACC-ATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 | || || ||| | |||| | | |||||| | | ||||| || || || | Sbjct 8271 ATCCACCA----TCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCA 8216 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| || | || |||||||| ||||| || || || | | Sbjct 8215 ACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGA 8156 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGT 110763 ||||||||| | || ||||| || |||||||| || |||||||| |||| ||| Sbjct 8155 GAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGT 8097 Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823 ||| |||||||| || || | | | |||||| |||||||| | || ||| | Sbjct 8096 ACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTG 8037 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTT--CCCACATGTCAAA 110880 || ||| | | ||||||| | | | | ||| || || ||||||||||| | Sbjct 8036 TTGCTTCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTC---TTGCCCCACATGTCATA 7980 Query 110881 CTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 |||||| | || | ||| || || || || ||| | || || || | || |||| | Sbjct 7979 TTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTT 7920 Query 110941 AGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 |||| || || | | || | | | |||||||| || || ||||| || | | Sbjct 7919 TGCCAGCTCGACGGATGCAGTCAAAGCA-GCGTGATAGATTGTCTCAAAAATTTGGATGT 7861 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATC 111054 | | | ||| || || || || || | || || | || ||| |||| Sbjct 7860 TGAGGTGCTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG-----CATC 7806 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || |||||||||||||| | | |||| |||||||| || | ||| ||||| || | Sbjct 7805 AGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-T 7747 Query 111115 CTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173 || ||| || || | || | ||||| | || | || ||| ||||| ||| | Sbjct 7746 CTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAA-CTTGG 7688 Query 111174 T-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 || || ||||| || | | ||| ||||| |||| ||||| ||||| ||||| Sbjct 7687 CAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGA 7628 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || | |||||||||||||||||| || ||||| | |||||| | ||| Sbjct 7627 AGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATC 7568 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | |||||| || || || || | ||||| ||||| ||||| |||| Sbjct 7567 TCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTG 7508 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || |||||||||||||||||| | || | || ||||| ||||| | || |||||||| Sbjct 7507 CAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAG 7448 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGT-TGGCCCGT-CCCTCCGCCTCGTACTTT 111469 | ||||| | | | | || | ||| | | | ||||| | ||| |||||||| || Sbjct 7447 TACCAAAGCTTTTGAGCCTTG-ACA--GTCTTACGGCCCATGTTCTCAGCCTCGTATTTC 7391 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 || | || |||||||| ||||| |||| | | ||| || || || || Sbjct 7390 TCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGG 7331 Query 111530 CAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | | | ||| | | | ||| ||||| ||||||||||| | |||||||||| Sbjct 7330 CACATCAATGTCCA--GTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCC 7273 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 | || | | || ||||| | || ||||||| | || ||||| ||| | | Sbjct 7272 AAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGT 7213 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 |||||||||| | || ||| ||||||||||||||||| |||| || | || || Sbjct 7212 CAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC---AG 7156 Query 111708 GACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||||| ||| | |||| ||||| | || ||| ||| || || |||||||| | Sbjct 7155 GACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAG 7096 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 ||| ||| || | || | || ||||| || ||| | | | |||| | | Sbjct 7095 GAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTC 7036 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAG 111879 |||| | | || ||||| ||||| ||| || || | ||||| | | | | | Sbjct 7035 TGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCA-AGT-CTTCAA 6978 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 ||| |||| ||||| | || ||||||||| || |||| ||||| || || | Sbjct 6977 AGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAG 6918 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 || | | ||| ||||||||| || || ||||| | ||||| | || || ||| Sbjct 6917 TTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTG 6860 Query 112000 --GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 ||||||| || ||| ||||| | | ||| ||||| | || ||||| || || | Sbjct 6859 CTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACA 6800 Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117 || || ||||| | ||| | ||||| ||| | |||||||||| || | ||| Sbjct 6799 GCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGA 6740 Query 112118 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || | || ||| ||||| |||| || ||||| Sbjct 6739 TATGATC-GCTCGAGGGTCTTGAATCCGAAGTA 6708 >seq4003 Length=28829 Score = 105 bits (116), Expect = 8e-18 Identities = 296/447 (66%), Gaps = 18/447 (4%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | ||| | || || | |||| ||||| || | || Sbjct 22851 ATCAAAACGTCCGGGTCTTGTCAAGGCCTGGTCGAGAACATCCGATCGATTGGTACCAGC 22910 Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || |||||||| ||| ||| | |||| || |||||||||||||| | | ||||| Sbjct 22911 AAGAACCACAACCTGCTCAGACGTATTG---AAACCATCCATCTCGGTCAAGATCTGATT 22967 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC-------- 11620 || || |||| ||||||||| | | ||| | ||| | || || | Sbjct 22968 AAGAGTCGCCTCTCGTTCATCATTTCC-GCCATTGAAAGAGC-CGGCTTTTCCCCGAGCT 23025 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | || ||||| ||||||||||||| |||||| || ||||| | || | Sbjct 23026 TTTCCAATTGCGTCAATTTCATCAATGAAGATAATACAAGGCGTATTTTTCCTTGCCAGA 23085 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 |||||||| ||||| || ||||||||||||||||||||||| ||||| | | Sbjct 23086 GAGAAGAGATCCCGAACTCTGGAAGCACCCACACCAACAAACATCTCTACAAACTCAGAA 23145 Query 11741 GCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 || | | || || ||| || || |||||| || || |||| || | | || Sbjct 23146 CCACTGACGCT-GAAGAAAGGCACGCCTGATTCTCCAGCTGTGGCCTTTGCTAACAAAGT 23204 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCC 11859 || || ||||| || ||| | |||| ||| ||||| || ||||||||||| || Sbjct 23205 TTTACCAGTACCGGGTGGACCAGAAAGAATGGCTCCTCGAGGAATCTTGGCACCCAGTCG 23264 Query 11860 AAAATATCTCTCGGGTTGCTTGAGAAA 11886 || ||||||| ||||||||| Sbjct 23265 TTCGAATTGCTCGGGTGTCTTGAGAAA 23291 >seq678 Length=9679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || ||||| || | || || ||||| ||||| Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 | ||| ||||| ||||||||||||||| | || | ||| || || ||||||||| Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||||| ||| ||||| |||| ||| |||| || |||| Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994718450400