Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4538 203 4e-47 seq678 109 7e-19 >seq4538 Length=19519 Score = 203 bits (224), Expect = 4e-47 Identities = 1117/1757 (64%), Gaps = 51/1757 (3%) Strand=Plus/Minus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||| | | |||||| |||||||| || |||||||| ||| |||||| | | |||| Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGC 8447 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || || | ||| | |||||| | |||| || |||||| ||| |||||| Sbjct 8446 ATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 8387 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCA 118006 || ||||| || ||||| || ||||| | | | | | | | | ||| ||||| Sbjct 8386 TCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGA-GATCTCCCA 8328 Query 118007 CACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCC 118066 |||||| |||| || ||| |||||| ||||||| | | ||||||||| ||||| Sbjct 8327 AACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCC 8268 Query 118067 ACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATC 118126 ||| | || || | | |||||| | | ||||| || || || | || || Sbjct 8267 ACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTC 8208 Query 118127 CTCCACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TA 118183 || || || ||| | ||||||| ||||| || || || || | ||| || Sbjct 8207 CTTCAGAAGCCATGGGT--TGACAACTTGGAACTCTCCAGCAAGAACACGACG-AGAGTA 8151 Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGG 118242 ||| |||| || |||||||| ||||| || ||| |||||||| || | ||| | || Sbjct 8150 GATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGG 8092 Query 118243 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCT 118302 | || ||||| || || | ||| | ||||| || ||||| | | || ||| || Sbjct 8091 CAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTGCT 8032 Query 118303 TGAGAGCGT-CCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 | | ||| ||||||| | || | ||||| ||| ||||| ||| | || Sbjct 8031 TCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCC---CACATGTCATATTGA 7976 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 118418 || || | ||| || || || || ||| ||||||| |||| || | || ||| Sbjct 7975 AGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCC 7916 Query 118419 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478 | ||| | || | || |||||||| ||||| |||||||| | || | Sbjct 7915 AGCTCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGG 7856 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--GCACAAAATAAATACATCCGCGAGAC 118536 ||| ||||| || || || | || || | | || || |||| || |||| Sbjct 7855 TGCTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG--CATCAGCAAGAC 7798 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CG 118595 |||| ||||| || ||||||| | || | | ||| ||| | || ||| | | Sbjct 7797 CTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-TCTGGAACT 7739 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || |||| |||| | |||| | || ||| ||||| | || || Sbjct 7738 GGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCG 7679 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 |||||||| | | | ||| || || |||| ||||| ||||| | ||||| || | | Sbjct 7678 TGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGT 7619 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || |||| ||| || || | | ||||| || |||||| | ||| ||||||||| Sbjct 7618 GATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCAC 7559 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || ||||| || | |||||| || || |||| ||| || |||||| Sbjct 7558 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCC 7499 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||| | || | || ||||| || || | | |||||||| | ||| | Sbjct 7498 TTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGC 7439 Query 118896 TCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC-----CTCTTCCTCGTACTTTGTGTAGA 118950 | ||| ||||| | | | |||| ||| ||||||| || || | Sbjct 7438 TTTTGAGCCTTGACAGT--CTTACG---GCCCATGTTCTCAGCCTCGTATTTCTCATACA 7384 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 || |||||||| ||||| | || | | || || || | ||||| | | Sbjct 7383 AAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCA 7324 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | | || ||||| ||||||||||| | ||||| ||||| || || Sbjct 7323 ATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCAT 7264 Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 |||| ||||| || ||| | ||||| | || || || || | || | || | Sbjct 7263 AGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACT 7204 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 119185 | | || ||| |||||||| || || ||||| | || | | || | |||| Sbjct 7203 CAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC---AGGACGCTTGT 7147 Query 119186 -ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 |||| |||| | ||||| || || ||| ||| || || |||||||| |||| || | Sbjct 7146 TACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTC 7087 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACT-TATTGGCTCTGACATCGTGGATG 119303 | | ||| | || ||||| || ||| || || | |||| | || ||||| Sbjct 7086 CGTTGGAGTTTCCGTTTGTACCAGCAAT-GTAGGCTCCAGTGGCACGGATTCTGTGGACA 7028 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | | ||| ||||| || || ||| || || ||||| | | | | || | || Sbjct 7027 TTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAA 6968 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || ||||| || ||| |||| | |||||||||| || || | ||| || || Sbjct 6967 ATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTG-TGCTTG 6909 Query 119424 -GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATC 119480 || |||||||| || || ||||| | |||||| | || || ||| ||||||| Sbjct 6908 TGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTGCTGGACATC 6851 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||||||||| | | | || ||| | || ||||||||||| | | || ||| Sbjct 6850 AAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGC 6791 Query 119541 ATAAACATGTATTGGGG 119557 |||| ||| | ||| || Sbjct 6790 ATAATCATATGTTGTGG 6774 >seq678 Length=9679 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||||||||||||||||||||| | || || ||||| ||||| Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 | ||| ||||| |||||||||||||| || || | || |||||| |||||||| Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| ||| || || |||| ||||| | |||||||| Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618398488140440