Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4538 269 3e-67 seq678 118 1e-21 >seq4538 Length=19519 Score = 269 bits (298), Expect = 3e-67 Identities = 1142/1764 (65%), Gaps = 65/1764 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | ||||| || || | |||||||| || || | ||||| ||| | Sbjct 6774 CCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCC 6833 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || ||||||| ||| || || | ||||| | ||||| || | Sbjct 6834 ATTGAGACCTACAACTTGATGTCCAGCAAA-TACTTT-ACCCACGCCTCTCCAACACTTT 6891 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 | ||||||||| ||| | | ||| | || || ||||| |||| || ||||||| Sbjct 6892 TTGCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGG 6951 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 || || | ||||| |||| ||| | | | | | ||||| | || || ||| || Sbjct 6952 ACAGCATTGATGGTATTTATGACACTTTGAAG-ACT-TGCGCTATGATTTCTAAGAACGC 7009 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 ||| ||||| || | | |||| | | |||| | | | ||| || || Sbjct 7010 TGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTGCTGGTAC 7069 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||| || | || | || ||| |||| |||||||| || || ||| ||| || | || Sbjct 7070 AAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATA 7129 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| |||| | ||| ||||| || || | || |||| ||||||||||| Sbjct 7130 TGTTGATCAGGGTGGTAACAAGCGTCCT---GGTGCTTTTGCCATCTACCTTGAGCCATG 7186 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | ||||||||||| | || ||||| || | || |||| || Sbjct 7187 GCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCG 7246 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| |||| ||||| |||||||||||| | ||||||||| | ||||| | Sbjct 7247 CGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAA 7306 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || | ||| | | | || || || || |||||| | | || | || Sbjct 7307 GAACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGG 7366 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG--AAGAAGGTCGGGCGACTGCGACG 104869 ||| |||||||| || | || || ||||||| |||| | || || | ||| Sbjct 7367 TGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCG--TAAGACT 7424 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || ||| | | ||| | |||||||| | |||| |||||||| || | || Sbjct 7425 GTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCT 7484 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| || ||||| |||| |||||| || || ||||| | ||| ||| Sbjct 7485 TTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATC 7544 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTG 105047 || ||||| || || || || || | || ||| | || |||||| || | Sbjct 7545 CGAAGCTCCAACCTGTGCACGGAGATTGTTGA--GTACTGTGCACCAGATGAAGTCGCCG 7602 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || || | |||||| | ||||| || | ||||| ||| | |||| || | || Sbjct 7603 TTTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACTTATG 7662 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| || || ||| ||| ||| | || | |||||| Sbjct 7663 ACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTTGTCAAGAACTTGAATAAGATTATTG 7722 Query 105168 ATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || | ||||| ||| ||| || | || ||| | | ||| | |||||| Sbjct 7723 ATATCAACTACTACCCAGTTCCAGA-AGCAAGAAAGAGCAATTTCCGTCACAGACCAATT 7781 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG----TCGCCACGCATTTGA 105282 | ||| |||||||| ||||| || |||| | ||||| | ||||| | || || Sbjct 7782 GCTCTTGGTGTTCAAGGTCTTGCTGATG----CTTTCTTGGCACTTCGCCTTCCTTTCGA 7837 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || ||| | |||| | || |||||||| || |||||||| ||| | Sbjct 7838 GTCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGCTGCT-T 7896 Query 105343 TGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||| || ||| ||||| || |||| |||| || || | ||| || || | Sbjct 7897 TGACTGCATCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAGGCTCAC 7956 Query 105402 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGC-TTCAC 105457 | || || |||||| | |||||||| ||| ||||||| || || ||| | | | Sbjct 7957 CTGCCTC-CAAGGGCGAGCTTCAATATGACATGTGGGGCAA---GACACCTACCGACCTT 8012 Query 105458 TACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | ||||||| |||| | ||| ||| ||| || | |||||||| |||||| | || Sbjct 8013 TGGGACTGGGCTAGCT-TGAAGCAACAGATCGCCCAGCATGGTCTTCGCAACAGTTTGCT 8071 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTG 105575 | | ||||| |||||||| ||| ||| |||| |||||||| || |||||||| | Sbjct 8072 CGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCTTCG 8130 Query 105576 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 | || || || | |||||||| ||| | | || || |||||||| ||||| Sbjct 8131 AGCCATATACTTCCAACATCTACTCT-CGTCGTGTTCTTGCTGGAGAGTTCCAAGTTGTC 8189 Query 105635 AACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 ||| ||| || || | ||||| || || || || ||||| | | |||||| Sbjct 8190 AAC--CCATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATGAAGA 8247 Query 105693 ATC---TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAA 105748 | | |||| | ||| ||||| || || |||||| || | || ||| ||| Sbjct 8248 ACCGAATCATCGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGAT 8303 Query 105749 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGC 105807 || ||| | ||| || |||||||| ||| | | | | | || | | ||||| Sbjct 8304 ATCAAGGCTCTTTACAAGACTGTTTGGGAGATC-TCACAACGTACTATCGTCCAGATGGC 8362 Query 105808 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCC 105867 || ||||||||| |||||||||||| |||| ||||| || |||| | || Sbjct 8363 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCC 8422 Query 105868 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 105927 ||| ||| ||| || | |||||| | |||||||| ||||||||| || || Sbjct 8423 AACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACTGG 8482 Query 105928 GATGTATTACCTCCGATCTAAGGC 105951 ||||| || |||||| | | ||| Sbjct 8483 AATGTACTATCTCCGAACCATGGC 8506 >seq678 Length=9679 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA----AAGT 94789 |||||| || || | ||||| || ||||||||| | | ||| ||| || ||| Sbjct 7913 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGT----TCGTTGGATCCAGGACAAGG 7968 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | | |||||||| | || || | || ||||| |||||||||||||||||| || Sbjct 7969 AGTCTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTG 8028 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | || ||| | || | |||| | |||||||| ||||| ||| | ||||| |||| Sbjct 8029 GCTCTTTCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCT 8088 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| | ||||| ||||||||||| |||||| || ||||| Sbjct 8089 CCAACGAGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583226176180760