Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 269 3e-67
seq678 118 1e-21
>seq4538
Length=19519
Score = 269 bits (298), Expect = 3e-67
Identities = 1142/1764 (65%), Gaps = 65/1764 (4%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
||||| | ||| | ||||| || || | |||||||| || || | ||||| ||| |
Sbjct 6774 CCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCTGCC 6833
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || ||||||| ||| || || | ||||| | ||||| || |
Sbjct 6834 ATTGAGACCTACAACTTGATGTCCAGCAAA-TACTTT-ACCCACGCCTCTCCAACACTTT 6891
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
| ||||||||| ||| | | ||| | || || ||||| |||| || |||||||
Sbjct 6892 TTGCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGG 6951
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|| || | ||||| |||| ||| | | | | | ||||| | || || ||| ||
Sbjct 6952 ACAGCATTGATGGTATTTATGACACTTTGAAG-ACT-TGCGCTATGATTTCTAAGAACGC 7009
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
||| ||||| || | | |||| | | |||| | | | ||| || ||
Sbjct 7010 TGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTGCTGGTAC 7069
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
||| || | || | || ||| |||| |||||||| || || ||| ||| || | ||
Sbjct 7070 AAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATA 7129
Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631
||| |||| | ||| ||||| || || | || |||| |||||||||||
Sbjct 7130 TGTTGATCAGGGTGGTAACAAGCGTCCT---GGTGCTTTTGCCATCTACCTTGAGCCATG 7186
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| ||| || | ||||||||||| | || ||||| || | || |||| ||
Sbjct 7187 GCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCG 7246
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||| ||||| |||| ||||| |||||||||||| | ||||||||| | ||||| |
Sbjct 7247 CGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAA 7306
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
|| | ||| | | | || || || || |||||| | | || | ||
Sbjct 7307 GAACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGG 7366
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG--AAGAAGGTCGGGCGACTGCGACG 104869
||| |||||||| || | || || ||||||| |||| | || || | |||
Sbjct 7367 TGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCG--TAAGACT 7424
Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| ||| | | ||| | |||||||| | |||| |||||||| || | ||
Sbjct 7425 GTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCCT 7484
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||| ||||| || ||||| |||| |||||| || || ||||| | ||| |||
Sbjct 7485 TTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCATC 7544
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTG 105047
|| ||||| || || || || || | || ||| | || |||||| || |
Sbjct 7545 CGAAGCTCCAACCTGTGCACGGAGATTGTTGA--GTACTGTGCACCAGATGAAGTCGCCG 7602
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107
| || || | |||||| | ||||| || | ||||| ||| | |||| || | ||
Sbjct 7603 TTTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACTTATG 7662
Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167
| | | || || ||||| || || ||| ||| ||| | || | ||||||
Sbjct 7663 ACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTTGTCAAGAACTTGAATAAGATTATTG 7722
Query 105168 ATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || | ||||| ||| ||| || | || ||| | | ||| | ||||||
Sbjct 7723 ATATCAACTACTACCCAGTTCCAGA-AGCAAGAAAGAGCAATTTCCGTCACAGACCAATT 7781
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG----TCGCCACGCATTTGA 105282
| ||| |||||||| ||||| || |||| | ||||| | ||||| | || ||
Sbjct 7782 GCTCTTGGTGTTCAAGGTCTTGCTGATG----CTTTCTTGGCACTTCGCCTTCCTTTCGA 7837
Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| || || ||| | |||| | || |||||||| || |||||||| ||| |
Sbjct 7838 GTCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGCTGCT-T 7896
Query 105343 TGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
||| || ||| ||||| || |||| |||| || || | ||| || || |
Sbjct 7897 TGACTGCATCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAGGCTCAC 7956
Query 105402 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGC-TTCAC 105457
| || || |||||| | |||||||| ||| ||||||| || || ||| | | |
Sbjct 7957 CTGCCTC-CAAGGGCGAGCTTCAATATGACATGTGGGGCAA---GACACCTACCGACCTT 8012
Query 105458 TACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516
| ||||||| |||| | ||| ||| ||| || | |||||||| |||||| | ||
Sbjct 8013 TGGGACTGGGCTAGCT-TGAAGCAACAGATCGCCCAGCATGGTCTTCGCAACAGTTTGCT 8071
Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTG 105575
| | ||||| |||||||| ||| ||| |||| |||||||| || |||||||| |
Sbjct 8072 CGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCTTCG 8130
Query 105576 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634
| || || || | |||||||| ||| | | || || |||||||| |||||
Sbjct 8131 AGCCATATACTTCCAACATCTACTCT-CGTCGTGTTCTTGCTGGAGAGTTCCAAGTTGTC 8189
Query 105635 AACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692
||| ||| || || | ||||| || || || || ||||| | | ||||||
Sbjct 8190 AAC--CCATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATGAAGA 8247
Query 105693 ATC---TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAA 105748
| | |||| | ||| ||||| || || |||||| || | || ||| |||
Sbjct 8248 ACCGAATCATCGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGAT 8303
Query 105749 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA-TGTCATTGACATGGC 105807
|| ||| | ||| || |||||||| ||| | | | | | || | | |||||
Sbjct 8304 ATCAAGGCTCTTTACAAGACTGTTTGGGAGATC-TCACAACGTACTATCGTCCAGATGGC 8362
Query 105808 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCC 105867
|| ||||||||| |||||||||||| |||| ||||| || |||| | ||
Sbjct 8363 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCC 8422
Query 105868 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 105927
||| ||| ||| || | |||||| | |||||||| ||||||||| || ||
Sbjct 8423 AACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACTGG 8482
Query 105928 GATGTATTACCTCCGATCTAAGGC 105951
||||| || |||||| | | |||
Sbjct 8483 AATGTACTATCTCCGAACCATGGC 8506
>seq678
Length=9679
Score = 118 bits (130), Expect = 1e-21
Identities = 162/226 (72%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA----AAGT 94789
|||||| || || | ||||| || ||||||||| | | ||| ||| || |||
Sbjct 7913 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGT----TCGTTGGATCCAGGACAAGG 7968
Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849
| | |||||||| | || || | || ||||| |||||||||||||||||| ||
Sbjct 7969 AGTCTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTG 8028
Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909
| || ||| | || | |||| | |||||||| ||||| ||| | ||||| ||||
Sbjct 8029 GCTCTTTCGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCT 8088
Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| | ||||| ||||||||||| |||||| || |||||
Sbjct 8089 CCAACGAGTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGC 8134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583226176180760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |