Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq167 212 2e-49
seq4739 141 3e-28
seq4684 123 8e-23
seq4538 87.8 5e-12
seq4295 87.8 5e-12
seq1669 84.2 7e-11
>seq167
Length=14118
Score = 212 bits (234), Expect = 2e-49
Identities = 489/734 (67%), Gaps = 11/734 (1%)
Strand=Plus/Minus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| ||||| |||||| | || || || || || ||||| | | | | | ||||||
Sbjct 3022 CCGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATC 2963
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | || || || || || || || || ||| |||| || || || | ||| || || |
Sbjct 2962 GAATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCA 2903
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
| || ||||| ||| |||| || ||| | ||||| || |||| || || ||| |
Sbjct 2902 CAGATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCA 2843
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432
| || || || || || ||||| | || || ||| || | ||| || ||
Sbjct 2842 ACACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTC---- 2787
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
|| | ||| | || || |||||||| || || | | | || |||| || ||| |
Sbjct 2786 CAGGCCGATATGAAGCACTTTCCTTTCACCGTCCT--CGACCGA-GGTGGAAAGCCAGTC 2730
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
| || |||| | || || || | |||||||| ||| ||||||||||| || |||
Sbjct 2729 GTCGAAATTGAGTTCAAGGGCGAGAAGAAACAATTCACACCAGAAGAAATTTCTTCCATG 2670
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
| || || || |||| || | |||||| || || | |||| ||| || | | ||
Sbjct 2669 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACCGTCAACAACGCC 2610
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| | || || |||||||| |||| ||| | || ||| || || || ||||| ||
Sbjct 2609 GTCGTCACAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGT 2550
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|| || || | || ||||| | || || || || || || ||||| || |||||
Sbjct 2549 TTAATCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCT 2490
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || || || || | | ||| || | ||| |||| || |||||| | |||||
Sbjct 2489 TACGGTCTCGACAAGAAGGTTGAGGGTGAGAGAAACGTTCTCATCTTTGATCTTGGTGGA 2430
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|| ||||| ||||| ||||| | || |||| ||||| || |||||||| || | |||
Sbjct 2429 GGAACTTTCGATGTTTCACTTTTGACCATTGAGGAGGGTATCTTTGAAGTCAAGTCCACT 2370
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|| ||||| || || | ||||| || || ||||| || | || || || ||||||
Sbjct 2369 GCCGGTGACACTCACTTGGGTGGTGAGGACTTTGACAACAGACTTGTGAACCACTTTGTT 2310
Query 349913 AAAGAATTTAAGCG 349926
|||||| || ||
Sbjct 2309 TCAGAATTCAAACG 2296
>seq4739
Length=56954
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||||||| ||||| ||||| || || || ||
Sbjct 21137 CATACCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 21078
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || ||||| ||||| |||||||| || || || || || || || || ||||||||
Sbjct 21077 GGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGG 21018
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || || || || | || ||||| || || | ||| || | |||
Sbjct 21017 TGGGATACCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTC 20958
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| | || | ||||||||| || | || || || || ||||||||
Sbjct 20957 AACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 140 bits (154), Expect = 1e-27
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | ||| ||||| | || || || || || ||||| || || || ||
Sbjct 20909 CATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTC 20850
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || || ||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 20849 CGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGG 20790
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || ||||||||||| || | || || || ||||| | || |||| |||
Sbjct 20789 TGGAATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTC 20730
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || |||| ||||| || ||
Sbjct 20729 GACCTCGAGAGTAATGGTCTTGCCAGT 20703
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || | || ||||||||||| || ||||| || |
Sbjct 20630 TTTGCATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGT 20571
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || || || || || || || || || ||||| | ||||| || |
Sbjct 20570 AATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGT 20511
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| ||||| || ||||| || || | || || || || || | |||||| |
Sbjct 20510 CTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAG 20451
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || |||| ||||| || ||
Sbjct 20450 ACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420
Score = 98.7 bits (108), Expect = 3e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTT-CGCCCATCTTCAAGTTGTTTTCCAGCAA 140604
||| |||||||| || || || | ||| | | || ||||| || | ||| || ||||| |
Sbjct 21326 CTCCTTTTGAATGTTGTAGTC-GCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGA 21268
Query 140605 AGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACAT 140664
| || | || || || || || ||||| || || |||||||| || || | || ||||
Sbjct 21267 AAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACAT 21208
Query 140665 TATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724
||||||| | || || | ||||| || | |||| |||||| || || | || || |
Sbjct 21207 TATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGA 21148
Query 140725 CAAAAATCTGCAT 140737
|||| ||||||||
Sbjct 21147 CAAAGATCTGCAT 21135
>seq4684
Length=58313
Score = 123 bits (136), Expect = 8e-23
Identities = 204/293 (70%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243
|||||| | | || | || || ||||| || | ||| ||||| ||| ||||| |||
Sbjct 51634 TCATATTTCGCAATAACGTCCTCCAATGCCTTGACAAGACGTCGTTGAATGTAACCTGTT 51575
Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303
| || || || || ||||| || | ||| |||||||| |||| || ||||||||
Sbjct 51574 TCGGCGGTCTTCACAGCGGTATCGATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAG 51515
Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363
|| || || || || | || | || | || | |||| ||||||||||| ||||
Sbjct 51514 AACTCCGTTGGCGTCAAACCTCGAAGGTAGGAGTTTTCAACAAATCCTCTTGATTCTGGA 51455
Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423
|||| ||||| ||||| ||||||| | ||| || | | || ||| ||||||| ||
Sbjct 51454 GAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCAAATGGAATACGC 51395
Query 378424 TTTCCATCAACATTCTGTTG---ACCAAGTGCAGAAACCATTTGAGCAATATT 378473
||||| ||||| |||||| | |||| || | |||||||| ||||||
Sbjct 51394 TTTCCTTCAACGGACTGTTGGCCAACAAGCGCGG---TCATTTGAGAAATATT 51345
>seq4538
Length=19519
Score = 87.8 bits (96), Expect = 5e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 202735 GTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCATA 202794
||| |||| || || ||||| || || | ||||||||||||||| ||||||||||||
Sbjct 8140 GTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTTGGCATA 8081
Query 202795 GGTGCAACTAGTAAACTATTGCGAAGCCCAT 202825
|| ||||| || ||||| |||||||| ||||
Sbjct 8080 GGAGCAACGAGCAAACTGTTGCGAAGACCAT 8050
>seq4295
Length=64570
Score = 87.8 bits (96), Expect = 5e-12
Identities = 193/286 (67%), Gaps = 9/286 (3%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| |||||||| || || || ||||||| || || || ||||||
Sbjct 61978 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAGCGTCAAGCTACCAAGGATGCT 61919
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| ||| || || | || ||||| |||| || || || || || || || || ||
Sbjct 61918 GGTGCCATCGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACCGCCGCTGCTATC 61859
Query 349730 GCATATGGGCTTGAT-----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784
||||| || |||| | ||| | | || | || |||| | | |||| ||||
Sbjct 61858 GCATACGGTCTTGGTGCCGGAAAGTCAA--ACAAGGAGCGAAATGTCTTGATTTATGATC 61801
Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTT 349843
| ||||| || || || ||||| || || || | || | || | | |||| | ||
Sbjct 61800 TTGGTGGAGGAACCTTCGATGTTTCTCTCCTCA-ACATCCAGGGTGGTGTTTTCACCGTC 61742
Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889
|| || |||||||||||||| || | || || ||||||| ||||
Sbjct 61741 AAGGCTACTGCTGGTGATACCCACTTGGGAGGTCAAGATTTCGATA 61696
>seq1669
Length=79912
Score = 84.2 bits (92), Expect = 7e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633
||||| || ||||| ||||||||||| || |||||||||||||| || || || || |||
Sbjct 7468 GTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCCGGTGGGATT 7527
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692
|| || || ||||| || || | || ||||| || || | || || | ||||| ||
Sbjct 7528 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCAACCTC 7586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515162201978447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |