Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq167 212 2e-49 seq4739 141 3e-28 seq4684 123 8e-23 seq4538 87.8 5e-12 seq4295 87.8 5e-12 seq1669 84.2 7e-11 >seq167 Length=14118 Score = 212 bits (234), Expect = 2e-49 Identities = 489/734 (67%), Gaps = 11/734 (1%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| ||||| |||||| | || || || || || ||||| | | | | | |||||| Sbjct 3022 CCGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTACCGTGATGATC 2963 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || || || || || ||| |||| || || || | ||| || || | Sbjct 2962 GAATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTCGCCTTCA 2903 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || ||||| ||| |||| || ||| | ||||| || |||| || || ||| | Sbjct 2902 CAGATACTGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCAGCCA 2843 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432 | || || || || || ||||| | || || ||| || | ||| || || Sbjct 2842 ACACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTC---- 2787 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || | ||| | || || |||||||| || || | | | || |||| || ||| | Sbjct 2786 CAGGCCGATATGAAGCACTTTCCTTTCACCGTCCT--CGACCGA-GGTGGAAAGCCAGTC 2730 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | || |||| | || || || | |||||||| ||| ||||||||||| || ||| Sbjct 2729 GTCGAAATTGAGTTCAAGGGCGAGAAGAAACAATTCACACCAGAAGAAATTTCTTCCATG 2670 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 | || || || |||| || | |||||| || || | |||| ||| || | | || Sbjct 2669 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACCGTCAACAACGCC 2610 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || | || || |||||||| |||| ||| | || ||| || || || ||||| || Sbjct 2609 GTCGTCACAGTCCCAGCCTACTTTACCGATTCACAACGTCAAGCTACCAAGGATGCCGGT 2550 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || | || ||||| | || || || || || || ||||| || ||||| Sbjct 2549 TTAATCGCTGGTCTCAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCT 2490 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || || || || | | ||| || | ||| |||| || |||||| | ||||| Sbjct 2489 TACGGTCTCGACAAGAAGGTTGAGGGTGAGAGAAACGTTCTCATCTTTGATCTTGGTGGA 2430 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||| ||||| ||||| | || |||| ||||| || |||||||| || | ||| Sbjct 2429 GGAACTTTCGATGTTTCACTTTTGACCATTGAGGAGGGTATCTTTGAAGTCAAGTCCACT 2370 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || | ||||| || || ||||| || | || || || |||||| Sbjct 2369 GCCGGTGACACTCACTTGGGTGGTGAGGACTTTGACAACAGACTTGTGAACCACTTTGTT 2310 Query 349913 AAAGAATTTAAGCG 349926 |||||| || || Sbjct 2309 TCAGAATTCAAACG 2296 >seq4739 Length=56954 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||||||| ||||| ||||| || || || || Sbjct 21137 CATACCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 21078 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| ||||| |||||||| || || || || || || || || |||||||| Sbjct 21077 GGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGG 21018 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || | || ||||| || || | ||| || | ||| Sbjct 21017 TGGGATACCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTC 20958 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| | || | ||||||||| || | || || || || |||||||| Sbjct 20957 AACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 Score = 140 bits (154), Expect = 1e-27 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | ||| ||||| | || || || || || ||||| || || || || Sbjct 20909 CATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTC 20850 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||||||||| ||||| ||||| |||||||| || || || Sbjct 20849 CGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGG 20790 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || ||||||||||| || | || || || ||||| | || |||| ||| Sbjct 20789 TGGAATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTC 20730 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || |||| ||||| || || Sbjct 20729 GACCTCGAGAGTAATGGTCTTGCCAGT 20703 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || ||||||||||| || ||||| || | Sbjct 20630 TTTGCATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGT 20571 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || || || || || || || || || ||||| | ||||| || | Sbjct 20570 AATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGT 20511 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| ||||| || ||||| || || | || || || || || | |||||| | Sbjct 20510 CTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAG 20451 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || |||| ||||| || || Sbjct 20450 ACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420 Score = 98.7 bits (108), Expect = 3e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTT-CGCCCATCTTCAAGTTGTTTTCCAGCAA 140604 ||| |||||||| || || || | ||| | | || ||||| || | ||| || ||||| | Sbjct 21326 CTCCTTTTGAATGTTGTAGTC-GCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGA 21268 Query 140605 AGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACAT 140664 | || | || || || || || ||||| || || |||||||| || || | || |||| Sbjct 21267 AAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACAT 21208 Query 140665 TATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 ||||||| | || || | ||||| || | |||| |||||| || || | || || | Sbjct 21207 TATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGA 21148 Query 140725 CAAAAATCTGCAT 140737 |||| |||||||| Sbjct 21147 CAAAGATCTGCAT 21135 >seq4684 Length=58313 Score = 123 bits (136), Expect = 8e-23 Identities = 204/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 |||||| | | || | || || ||||| || | ||| ||||| ||| ||||| ||| Sbjct 51634 TCATATTTCGCAATAACGTCCTCCAATGCCTTGACAAGACGTCGTTGAATGTAACCTGTT 51575 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | || || || || ||||| || | ||| |||||||| |||| || |||||||| Sbjct 51574 TCGGCGGTCTTCACAGCGGTATCGATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAG 51515 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || || || || || | || | || | || | |||| ||||||||||| |||| Sbjct 51514 AACTCCGTTGGCGTCAAACCTCGAAGGTAGGAGTTTTCAACAAATCCTCTTGATTCTGGA 51455 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 |||| ||||| ||||| ||||||| | ||| || | | || ||| ||||||| || Sbjct 51454 GAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCAAATGGAATACGC 51395 Query 378424 TTTCCATCAACATTCTGTTG---ACCAAGTGCAGAAACCATTTGAGCAATATT 378473 ||||| ||||| |||||| | |||| || | |||||||| |||||| Sbjct 51394 TTTCCTTCAACGGACTGTTGGCCAACAAGCGCGG---TCATTTGAGAAATATT 51345 >seq4538 Length=19519 Score = 87.8 bits (96), Expect = 5e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 202735 GTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCATA 202794 ||| |||| || || ||||| || || | ||||||||||||||| |||||||||||| Sbjct 8140 GTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTTGGCATA 8081 Query 202795 GGTGCAACTAGTAAACTATTGCGAAGCCCAT 202825 || ||||| || ||||| |||||||| |||| Sbjct 8080 GGAGCAACGAGCAAACTGTTGCGAAGACCAT 8050 >seq4295 Length=64570 Score = 87.8 bits (96), Expect = 5e-12 Identities = 193/286 (67%), Gaps = 9/286 (3%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| |||||||| || || || ||||||| || || || |||||| Sbjct 61978 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAGCGTCAAGCTACCAAGGATGCT 61919 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| || || | || ||||| |||| || || || || || || || || || Sbjct 61918 GGTGCCATCGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACCGCCGCTGCTATC 61859 Query 349730 GCATATGGGCTTGAT-----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 ||||| || |||| | ||| | | || | || |||| | | |||| |||| Sbjct 61858 GCATACGGTCTTGGTGCCGGAAAGTCAA--ACAAGGAGCGAAATGTCTTGATTTATGATC 61801 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTT 349843 | ||||| || || || ||||| || || || | || | || | | |||| | || Sbjct 61800 TTGGTGGAGGAACCTTCGATGTTTCTCTCCTCA-ACATCCAGGGTGGTGTTTTCACCGTC 61742 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 || || |||||||||||||| || | || || ||||||| |||| Sbjct 61741 AAGGCTACTGCTGGTGATACCCACTTGGGAGGTCAAGATTTCGATA 61696 >seq1669 Length=79912 Score = 84.2 bits (92), Expect = 7e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 ||||| || ||||| ||||||||||| || |||||||||||||| || || || || ||| Sbjct 7468 GTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCCGGTGGGATT 7527 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 || || || ||||| || || | || ||||| || || | || || | ||||| || Sbjct 7528 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCAACCTC 7586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515162201978447