Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 161 1e-34
seq678 138 1e-27
>seq4538
Length=19519
Score = 161 bits (178), Expect = 1e-34
Identities = 702/1100 (64%), Gaps = 34/1100 (3%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||||| || || |||||||| |||||| ||| | || || |||
Sbjct 8153 GTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACT 8094
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
||| || ||||| || || || || | | || |||||||||||| |||||
Sbjct 8093 GGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTG 8034
Query 78654 CTT-----TAGGCC-GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| ||| || |||||||| || | | | | ||||||||||| ||||||
Sbjct 8033 CTTCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCCCACATGTCATATTGAAG 7974
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767
|||| ||| || || || || | | |||||||| | ||| | ||| || ||
Sbjct 7973 CTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAG 7914
Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827
||| || | || || ||||| || | | ||| || || ||||||| |
Sbjct 7913 CTCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTG 7854
Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTG 78887
|||| | | ||||| | ||||| || || ||| |||| || || || ||
Sbjct 7853 CTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAGCATCAGCAAGACCTTG 7794
Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGT 78946
|| || | ||| || |||| ||| || | |||||||||| || | | | | ||||
Sbjct 7793 AACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCTTC-TGGAACTGGGT 7735
Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGT 79003
| |||| ||| || | |||| ||| | |||| || | | || ||||||
Sbjct 7734 AGTAGTTGATATCAATAATCTTATTCAAGTT---CTTGACAACAACTTGGCAGACCTCGT 7678
Query 79004 ACAATTTGGCGAAATCAAAAT--GATTTCCTTTGATGAAAGTCGGTAGGCACAGC----G 79057
| || ||| ||| || | || ||| || || | || || | ||| |
Sbjct 7677 GAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTG 7618
Query 79058 ATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACA 79117
|||||| ||||| ||||| || || || | | ||| | || || |||||||
Sbjct 7617 ATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACA 7558
Query 79118 AATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175
|| || ||| |||||| || | |||||||||||||||||| ||| ||||| ||
Sbjct 7557 GGTTGGAG--CTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATC 7500
Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235
||||||| |||| | || | |||||||| |||| | ||||| || ||| |
Sbjct 7499 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAG 7440
Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGT-----GCGACGTACGTCCGGTAC 79290
| | ||| |||| ||| || | || ||| || |||| || |||
Sbjct 7439 CTTTTGAGCCTTGACAGTCTT-----ACGGCCCATGTTCTCAGCCTCGTATTTCTCATAC 7385
Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350
|| | | || | || || || || || | || || || ||||||| |||||||||
Sbjct 7384 AAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATC 7325
Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410
| |||||| || ||| ||||| || |||||| | || || ||||| || ||
Sbjct 7324 AATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCA 7265
Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470
||| || || ||| || | ||| || | || |||||| || || || || ||
Sbjct 7264 TAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAAC 7205
Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530
|| | || || |||||||| ||||| || |||||||| || | ||| ||||||
Sbjct 7204 TCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTA 7145
Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590
|| ||||| | || || | ||| ||||||||||||||||| ||||| || || || |||
Sbjct 7144 CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCG 7085
Query 79591 TCGGCGACGCCGTTCGTCCC 79610
| || | ||||| || ||
Sbjct 7084 TTGGAGTTTCCGTTTGTACC 7065
Score = 145 bits (160), Expect = 8e-30
Identities = 360/541 (67%), Gaps = 4/541 (1%)
Strand=Plus/Plus
Query 19166 GAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224
||||| ||| || ||||| |||| || | ||| || ||||| | || || |||||
Sbjct 6837 GAGACCTACAACTTGATGT-CCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGC 6895
Query 19225 CGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACA 19283
|| ||||| |||| | || | || |||||||| | | |||||||| ||||
Sbjct 6896 TGCTGGTACTCCACAAGCA-CAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACA 6954
Query 19284 GCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGG 19343
||||||| || || || || || | ||| ||||| || || ||| | || |
Sbjct 6955 GCATTGATGGTATTTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTG 7014
Query 19344 GTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403
||||||| | | | | ||||| | | ||| | || ||| || ||||
Sbjct 7015 GTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTGCTGGTACAAACG 7074
Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463
|| || |||| || || || ||||| || || ||||||||||| ||||| || ||
Sbjct 7075 GAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTG 7134
Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523
| ||||| || ||| || || | || ||||||||||| |||||||||||||| |
Sbjct 7135 ATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 7194
Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583
| ||| | || ||||| || || || |||||| || | || ||| | ||| || |
Sbjct 7195 ATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTG 7254
Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643
| || ||| || | |||||||| || |||||||| || ||||| ||| || |
Sbjct 7255 ATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTG 7314
Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703
| ||| |||||||||| |||| || ||||| | | ||||| ||||| || | ||
Sbjct 7315 ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGT 7374
Query 19704 T 19704
|
Sbjct 7375 T 7375
>seq678
Length=9679
Score = 138 bits (152), Expect = 1e-27
Identities = 311/455 (68%), Gaps = 18/455 (4%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| |||||||| | || ||||| ||| || || || |||||||| |||||| ||
Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTT 8035
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | || || ||| | || |||||||| || ||| | || || | ||||||||||||
Sbjct 8036 CGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGA 8095
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151
| |||| ||||| |||||||| ||||| || |||||| || | | || ||| | ||
Sbjct 8096 GTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCA-TGCCTC-CTCTTCTC-CCA 8152
Query 60152 ATTGGAAAAATGCCCTTCCAAGGAT-ATTCACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208
| | | |||| ||||| | | |||| | | ||| || |||| ||| |
Sbjct 8153 TCTCAAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGAT 8212
Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268
||| |||||| | || || || ||||| || ||| | |||||| |||||||
Sbjct 8213 TGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTT 8272
Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCC--CAGTTTGGAGAA 60323
|||| ||| ||||| |||| || || || ||| ||| | || | | |||||
Sbjct 8273 GATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAA 8332
Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383
|| ||||| || ||||| ||||||| ||||||| |||||| | | ||
Sbjct 8333 GG-----TTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGA 8387
Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||||||||||| |||||||| || | |||||
Sbjct 8388 AAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTA 8422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548492238196560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |