Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4538 161 1e-34 seq678 138 1e-27 >seq4538 Length=19519 Score = 161 bits (178), Expect = 1e-34 Identities = 702/1100 (64%), Gaps = 34/1100 (3%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| || || |||||||| |||||| ||| | || || ||| Sbjct 8153 GTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACT 8094 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| || || || || | | || |||||||||||| ||||| Sbjct 8093 GGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTG 8034 Query 78654 CTT-----TAGGCC-GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| ||| || |||||||| || | | | | ||||||||||| |||||| Sbjct 8033 CTTCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCCCACATGTCATATTGAAG 7974 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 |||| ||| || || || || | | |||||||| | ||| | ||| || || Sbjct 7973 CTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAG 7914 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||| || | || || ||||| || | | ||| || || ||||||| | Sbjct 7913 CTCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTG 7854 Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTG 78887 |||| | | ||||| | ||||| || || ||| |||| || || || || Sbjct 7853 CTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAGCATCAGCAAGACCTTG 7794 Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGT 78946 || || | ||| || |||| ||| || | |||||||||| || | | | | |||| Sbjct 7793 AACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCTTC-TGGAACTGGGT 7735 Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGT 79003 | |||| ||| || | |||| ||| | |||| || | | || |||||| Sbjct 7734 AGTAGTTGATATCAATAATCTTATTCAAGTT---CTTGACAACAACTTGGCAGACCTCGT 7678 Query 79004 ACAATTTGGCGAAATCAAAAT--GATTTCCTTTGATGAAAGTCGGTAGGCACAGC----G 79057 | || ||| ||| || | || ||| || || | || || | ||| | Sbjct 7677 GAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTG 7618 Query 79058 ATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACA 79117 |||||| ||||| ||||| || || || | | ||| | || || ||||||| Sbjct 7617 ATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACA 7558 Query 79118 AATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 || || ||| |||||| || | |||||||||||||||||| ||| ||||| || Sbjct 7557 GGTTGGAG--CTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATC 7500 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 ||||||| |||| | || | |||||||| |||| | ||||| || ||| | Sbjct 7499 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAG 7440 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGT-----GCGACGTACGTCCGGTAC 79290 | | ||| |||| ||| || | || ||| || |||| || ||| Sbjct 7439 CTTTTGAGCCTTGACAGTCTT-----ACGGCCCATGTTCTCAGCCTCGTATTTCTCATAC 7385 Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350 || | | || | || || || || || | || || || ||||||| ||||||||| Sbjct 7384 AAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATC 7325 Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 | |||||| || ||| ||||| || |||||| | || || ||||| || || Sbjct 7324 AATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCA 7265 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||| || || ||| || | ||| || | || |||||| || || || || || Sbjct 7264 TAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAAC 7205 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | || || |||||||| ||||| || |||||||| || | ||| |||||| Sbjct 7204 TCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTA 7145 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 || ||||| | || || | ||| ||||||||||||||||| ||||| || || || ||| Sbjct 7144 CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCG 7085 Query 79591 TCGGCGACGCCGTTCGTCCC 79610 | || | ||||| || || Sbjct 7084 TTGGAGTTTCCGTTTGTACC 7065 Score = 145 bits (160), Expect = 8e-30 Identities = 360/541 (67%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 ||||| ||| || ||||| |||| || | ||| || ||||| | || || ||||| Sbjct 6837 GAGACCTACAACTTGATGT-CCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGC 6895 Query 19225 CGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACA 19283 || ||||| |||| | || | || |||||||| | | |||||||| |||| Sbjct 6896 TGCTGGTACTCCACAAGCA-CAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACA 6954 Query 19284 GCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGG 19343 ||||||| || || || || || | ||| ||||| || || ||| | || | Sbjct 6955 GCATTGATGGTATTTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTG 7014 Query 19344 GTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 ||||||| | | | | ||||| | | ||| | || ||| || |||| Sbjct 7015 GTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTGCTGGTACAAACG 7074 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 || || |||| || || || ||||| || || ||||||||||| ||||| || || Sbjct 7075 GAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTG 7134 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | ||||| || ||| || || | || ||||||||||| |||||||||||||| | Sbjct 7135 ATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 7194 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | ||| | || ||||| || || || |||||| || | || ||| | ||| || | Sbjct 7195 ATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTG 7254 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 | || ||| || | |||||||| || |||||||| || ||||| ||| || | Sbjct 7255 ATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTG 7314 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| |||||||||| |||| || ||||| | | ||||| ||||| || | || Sbjct 7315 ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGT 7374 Query 19704 T 19704 | Sbjct 7375 T 7375 >seq678 Length=9679 Score = 138 bits (152), Expect = 1e-27 Identities = 311/455 (68%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| |||||||| | || ||||| ||| || || || |||||||| |||||| || Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTT 8035 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | || || ||| | || |||||||| || ||| | || || | |||||||||||| Sbjct 8036 CGCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGA 8095 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 | |||| ||||| |||||||| ||||| || |||||| || | | || ||| | || Sbjct 8096 GTTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCA-TGCCTC-CTCTTCTC-CCA 8152 Query 60152 ATTGGAAAAATGCCCTTCCAAGGAT-ATTCACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208 | | | |||| ||||| | | |||| | | ||| || |||| ||| | Sbjct 8153 TCTCAAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGAT 8212 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||| | || || || ||||| || ||| | |||||| ||||||| Sbjct 8213 TGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTT 8272 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCC--CAGTTTGGAGAA 60323 |||| ||| ||||| |||| || || || ||| ||| | || | | ||||| Sbjct 8273 GATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAA 8332 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || ||||| || ||||| ||||||| ||||||| |||||| | | || Sbjct 8333 GG-----TTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGA 8387 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| || | ||||| Sbjct 8388 AAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTA 8422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548492238196560