Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4538 167 3e-36 seq678 109 6e-19 seq4218 86.0 7e-12 >seq4538 Length=19519 Score = 167 bits (184), Expect = 3e-36 Identities = 491/748 (66%), Gaps = 8/748 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| || || | ||||| |||||||| | | | || || | |||||| ||| | Sbjct 6789 ATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGC-TGCCATTGAGACCTACAA 6847 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 ||| ||| | || |||||||| |||||| | ||||| || || |||||||| Sbjct 6848 CTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGCTGCTGGTACTCC 6907 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || | || | || || ||||| | | |||||||| ||| || || || || Sbjct 6908 ACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACAGCATTGATGGTAT 6967 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 || || || | ||| || || || || ||| | |||||||||||| | | Sbjct 6968 TTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTGGTATCGGTCTTAA 7027 Query 53434 C-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | | | ||| ||||||| | || | || || || ||||| | || | Sbjct 7028 TGTCCACAGAA--TCCGTGCCACTGGAGCCTACATTGCTGGTACAAACGGAAACTCCAAC 7085 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 ||||| || |||||||| || || ||||||||||| ||| | || || | ||||||||| Sbjct 7086 GGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTGATCAGGGTGGT 7145 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || ||||||||||| ||||| |||||||| || | | ||| Sbjct 7146 AACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTTGAG 7205 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || || || || || ||| || || | |||||| | ||| |||||| || || Sbjct 7206 TTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTGATCTTTTCTAT 7265 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| |||||||| || | |||||| | || || ||| || || ||| || Sbjct 7266 GCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTG 7325 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| |||||||| || || | | || |||||||| |||||| | | || Sbjct 7326 ATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGTTTGAGGCTTTG 7385 Query 53792 TATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | | || | | |||| |||||||| | || | ||| Sbjct 7386 TATGAGAAATACGAGGCTGAGAACATGGGCCGTAAGACTGTCAAGGCTCAAAAGCTTTGG 7445 Query 53852 GATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | | || ||| | ||| ||| ||||| |||| || | |||| |||||||||| | Sbjct 7446 TACTCTATTCTCGA-AGCTCAGACCGAGACCGGAAACCCTTTCATGCTCTACAAGGATGC 7504 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| |||||||||||||||||| Sbjct 7505 CTGCAACCGAAAGAGCAACCAGAAGAAC 7532 >seq678 Length=9679 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | ||| |||| |||||| |||||||||||||||||||||||| Sbjct 8101 ATCAACTCGTTGGAGAAAGTAAGACCAGCCATAAGACCACGCTTCTTCAACCAAAAGATG 8042 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| || ||||| |||||||| || || ||| |||||||| ||||| ||||| Sbjct 8041 GATGCGAAAGAGCCACTAAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGA 7982 Query 74904 GCGAA 74908 || || Sbjct 7981 GCAAA 7977 >seq4218 Length=65949 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/297 (67%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| | ||| || ||||| || | ||| || ||||| | || |||||||| || |||| Sbjct 43223 CAATCTCGTAAAAATGTAACGAGGGCTTGCAGCATCGGTACCTCCTGCCAGACGACTTCC 43282 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | |||| |||||||| ||| | ||||| | || ||||| || ||||| || Sbjct 43283 AAAATTTCCACTTGGCTCGAGACAGTTTACATTGTTAGATCCGACGAAGTTTTGAGC-AA 43341 Query 152142 ATTCAC-AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGA 152200 | || |||||| |||| | |||||||||||||| || || || | || | | Sbjct 43342 GTCCAATAATCGTTTGGTGCATAGATGCTTCACCGTGGTGGTAAGCGGTATTTTCGGACA 43401 Query 152201 TGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCG--TCAGGTTCTTCTTGAGACAGGC 152258 |||||| | | | | |||||||||| || ||| || || ||| | |||||| Sbjct 43402 CGTATCCACCAAGTTCCACCACCTTCATATC--TCGAACAAGATTGCGCTTAAAACAGGC 43459 Query 152259 GTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 | ||||| || | || ||||| || || || | || |||||| ||||| Sbjct 43460 AAACATCACTTTTCTTTGTCCAGGTTTGAATCCATCGATTACCGAAGGAATAGAACG 43516 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| |||||||||||| | || || || ||||| | || || | | Sbjct 43230 GTAAAAATGTAACGAGGGCTTGCAGCATCGGTACCTCCTGCCAGACGACTTCCAAAATTT 43289 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423 ||||| ||||| | ||| | ||||| | || || |||||||||| ||||| | Sbjct 43290 CCACTTGGCTCGAGACAGTTTACATTGTTAGATCCGACGAAGTTTTGAG-CAAGTCCAAT 43348 Query 117424 AATCGTACCTTGGAGGCT---CGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 |||||| |||| | | || ||||| ||||| || || || | || | |||||| Sbjct 43349 AATCGT---TTGGTGCATAGATGCTTCACCGTGGTGGTAAGCGGTATTTTCGGACACGTA 43405 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || | || | |||||||||| ||| Sbjct 43406 TCCACCAAGTTCCACCACCTTCATATCT 43433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183515890200