Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 167 3e-36
seq678 109 6e-19
seq4218 86.0 7e-12
>seq4538
Length=19519
Score = 167 bits (184), Expect = 3e-36
Identities = 491/748 (66%), Gaps = 8/748 (1%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253
||||| || || | ||||| |||||||| | | | || || | |||||| ||| |
Sbjct 6789 ATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGC-TGCCATTGAGACCTACAA 6847
Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313
||| ||| | || |||||||| |||||| | ||||| || || ||||||||
Sbjct 6848 CTTGATGTCCAGCAAATACTTTACCCACGCCTCTCCAACACTTTTTGCTGCTGGTACTCC 6907
Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373
|| | || | || || ||||| | | |||||||| ||| || || || ||
Sbjct 6908 ACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGGAGGACAGCATTGATGGTAT 6967
Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433
|| || || | ||| || || || || ||| | |||||||||||| | |
Sbjct 6968 TTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACGCTGGTGGTATCGGTCTTAA 7027
Query 53434 C-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
| | | ||| ||||||| | || | || || || ||||| | || |
Sbjct 7028 TGTCCACAGAA--TCCGTGCCACTGGAGCCTACATTGCTGGTACAAACGGAAACTCCAAC 7085
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
||||| || |||||||| || || ||||||||||| ||| | || || | |||||||||
Sbjct 7086 GGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGATATGTTGATCAGGGTGGT 7145
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | || ||||||||||| ||||| |||||||| || | | |||
Sbjct 7146 AACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTTGAG 7205
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
|| || || || || ||| || || | |||||| | ||| |||||| || ||
Sbjct 7206 TTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGCGCCCGTGATCTTTTCTAT 7265
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
||||| |||||||| || | |||||| | || || ||| || || ||| ||
Sbjct 7266 GCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTG 7325
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
|||||||| |||||||| || || | | || |||||||| |||||| | | ||
Sbjct 7326 ATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACGGTGATGAGTTTGAGGCTTTG 7385
Query 53792 TATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851
||| || |||| | | || | | |||| |||||||| | || | |||
Sbjct 7386 TATGAGAAATACGAGGCTGAGAACATGGGCCGTAAGACTGTCAAGGCTCAAAAGCTTTGG 7445
Query 53852 GATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910
| | || ||| | ||| ||| ||||| |||| || | |||| |||||||||| |
Sbjct 7446 TACTCTATTCTCGA-AGCTCAGACCGAGACCGGAAACCCTTTCATGCTCTACAAGGATGC 7504
Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||| ||||||||||||||||||
Sbjct 7505 CTGCAACCGAAAGAGCAACCAGAAGAAC 7532
>seq678
Length=9679
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
||||| || || || || | ||| |||| |||||| ||||||||||||||||||||||||
Sbjct 8101 ATCAACTCGTTGGAGAAAGTAAGACCAGCCATAAGACCACGCTTCTTCAACCAAAAGATG 8042
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| ||| || ||||| |||||||| || || ||| |||||||| ||||| |||||
Sbjct 8041 GATGCGAAAGAGCCACTAAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGA 7982
Query 74904 GCGAA 74908
|| ||
Sbjct 7981 GCAAA 7977
>seq4218
Length=65949
Score = 86.0 bits (94), Expect = 7e-12
Identities = 200/297 (67%), Gaps = 6/297 (2%)
Strand=Plus/Plus
Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081
||| | ||| || ||||| || | ||| || ||||| | || |||||||| || ||||
Sbjct 43223 CAATCTCGTAAAAATGTAACGAGGGCTTGCAGCATCGGTACCTCCTGCCAGACGACTTCC 43282
Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141
||| | |||| |||||||| ||| | ||||| | || ||||| || ||||| ||
Sbjct 43283 AAAATTTCCACTTGGCTCGAGACAGTTTACATTGTTAGATCCGACGAAGTTTTGAGC-AA 43341
Query 152142 ATTCAC-AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGA 152200
| || |||||| |||| | |||||||||||||| || || || | || | |
Sbjct 43342 GTCCAATAATCGTTTGGTGCATAGATGCTTCACCGTGGTGGTAAGCGGTATTTTCGGACA 43401
Query 152201 TGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCG--TCAGGTTCTTCTTGAGACAGGC 152258
|||||| | | | | |||||||||| || ||| || || ||| | ||||||
Sbjct 43402 CGTATCCACCAAGTTCCACCACCTTCATATC--TCGAACAAGATTGCGCTTAAAACAGGC 43459
Query 152259 GTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
| ||||| || | || ||||| || || || | || |||||| |||||
Sbjct 43460 AAACATCACTTTTCTTTGTCCAGGTTTGAATCCATCGATTACCGAAGGAATAGAACG 43516
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/208 (70%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||||||||||| |||||||||||| | || || || ||||| | || || | |
Sbjct 43230 GTAAAAATGTAACGAGGGCTTGCAGCATCGGTACCTCCTGCCAGACGACTTCCAAAATTT 43289
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423
||||| ||||| | ||| | ||||| | || || |||||||||| ||||| |
Sbjct 43290 CCACTTGGCTCGAGACAGTTTACATTGTTAGATCCGACGAAGTTTTGAG-CAAGTCCAAT 43348
Query 117424 AATCGTACCTTGGAGGCT---CGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480
|||||| |||| | | || ||||| ||||| || || || | || | ||||||
Sbjct 43349 AATCGT---TTGGTGCATAGATGCTTCACCGTGGTGGTAAGCGGTATTTTCGGACACGTA 43405
Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTCT 117508
|| | || | |||||||||| |||
Sbjct 43406 TCCACCAAGTTCCACCACCTTCATATCT 43433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547183515890200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |