Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 192 7e-44
seq4739 163 3e-35
seq4373 120 3e-22
seq1669 95.1 1e-14
>seq4538
Length=19519
Score = 192 bits (212), Expect = 7e-44
Identities = 640/980 (65%), Gaps = 33/980 (3%)
Strand=Plus/Minus
Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACAAC 80840
|| || |||| |||||| |||| |||| || | |||| ||| | || ||||||
Sbjct 7750 GCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT-CTTGACAACAAC 7692
Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGC 80894
| || || ||||| ||||| ||||| || ||| || | | ||| |||
Sbjct 7691 TTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGT 7632
Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTC 80951
||||| || || |||| |||||| ||||| || || || | || | ||| |||
Sbjct 7631 TGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCA-CAGTA--CTC 7575
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGAC 81009
|| || |||||||||| || || ||| || ||||| ||||| |||||||| |
Sbjct 7574 AACAATCTCCGTGCACAGGTTGGAG--CTTCGGATGGTACCAAGGTTCTTCTGGTTGCTC 7517
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| |||||| || ||||||||| |||| | ||| | ||||||||| ||| | | |
Sbjct 7516 TTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCG 7457
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
|| || | || ||||| || | |||||||| ||| ||| || || ||| |
Sbjct 7456 AGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCG 7397
Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189
|| || | || | || |||| |||||| || |||| | | || ||||||
Sbjct 7396 TATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCG 7337
Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249
||||||||||||| |||||| || || || ||| ||||||||| || ||
Sbjct 7336 TTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGA 7277
Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309
||||| || || ||| || || ||| ||| |||| || | || ||||| ||
Sbjct 7276 ATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGG 7217
Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-- 81366
| || || || || | || || || ||||||||||| || || | ||| | | ||
Sbjct 7216 AGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCA 7157
Query 81367 ---CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
| |||| | |||||||| | || || | ||| || ||| || || || | |
Sbjct 7156 GGACGCTTGTTA---CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGC 7100
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
||||| | || || | || | ||||| ||||| | || | || |||| ||
Sbjct 7099 ATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGG 7040
Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
| || || ||||||||| ||||| | ||| |||||| ||| || |||
Sbjct 7039 ATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTC 6980
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| || |||||||| || || ||||| || | |||||||| | | |||||| |||
Sbjct 6979 AAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAG 6920
Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
| | | |||| | ||| || ||| || |||||||| | ||||| | || ||
Sbjct 6919 AGTT--GTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATT 6862
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCG 81720
| | ||||||| || ||||| || || | || | ||||| ||||||||||||||
Sbjct 6861 TGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCT-CAATATTATCACCGTGAATACCA 6803
Query 81721 ATAGCTACACGCATAAACAT 81740
| ||| |||||||||| |||
Sbjct 6802 ACAGCAACACGCATAATCAT 6783
>seq4739
Length=56954
Score = 163 bits (180), Expect = 3e-35
Identities = 177/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | || |||||||| ||||| | |||||||||||
Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || || ||||| |||||||| ||||| ||||||||
Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC-TAGCAGACTATAA 27584
||||| | ||||| |||||||||||| | ||||||| |||||||| |||| ||||| ||
Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGC-GACTACAA 21313
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| |||||||| ||| || || | || | ||||| || || ||||||
Sbjct 21314 CATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGGACAA 21365
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || || ||||| || ||| | || ||||| ||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| ||||| | || || || ||||||||||| || || || || ||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || |||||||| ||||||| || ||| | | ||||| ||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| |||||||||||| | || | |||||||| |||||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGTACTTCGTCTTCGTGGTGG 21133
Score = 141 bits (156), Expect = 1e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| | || |||||||| |||||||| ||||| || ||| || | |||||
Sbjct 20691 GTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGAC 20750
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || |||||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct 20751 AACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTATC 20810
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| |||||||| ||||| ||||| | || || || | ||||| || |||||||||||
Sbjct 20811 TTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGAA 20870
Query 27598 TCCACTCTTCA 27608
||||| || ||
Sbjct 20871 TCCACACTCCA 20881
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || |||||||||||||| || || ||||| ||||| ||| | || | ||| |
Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||||||||| || |||||||||||||| || || | || || || || |||
Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | ||||||||| | || || || | || ||||| || ||||| ||
Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCAC 20599
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | |||||||| |||||
Sbjct 20600 TTGGTCCTCCGTCTTCGTGGTGG 20622
>seq4373
Length=63444
Score = 120 bits (132), Expect = 3e-22
Identities = 141/188 (75%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 27447 TCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGA 27506
||| ||||||||||| ||| | || | ||| | || | || || |||||||||||
Sbjct 31617 TCTAGAGGTTGAGTCTTCTGACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGA 31558
Query 27507 GGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG 27566
|||||| || |||||||| ||||| | || || || || ||||||||||| || | ||
Sbjct 31557 GGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCG 31498
Query 27567 TACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625
|||||| ||| ||||| || |||||||||| || || || ||||| || | ||||| |
Sbjct 31497 TACCCTCAGC-GACTACAACATCCAAAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTCC 31439
Query 27626 GCGGTGGA 27633
| || |||
Sbjct 31438 GTGGAGGA 31431
>seq1669
Length=79912
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497
||| ||| | | ||||||||||| || | || | ||| | ||| | || || ||
Sbjct 7599 GACGATTTTTTTAGAGGTTGAGTCTTCGGACACAATCGACAATGTCAAGTCCAAGATCCA 7540
Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557
||||||||||||||| || || ||||| || |||||||| || || || || ||||||||
Sbjct 7539 GGACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAACAACTCGA 7480
Query 27558 GGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGG 27595
|| | || ||||| ||| ||||| || |||||||||
Sbjct 7479 AGACGGCCGAACCCTCAGC-GACTACAACATCCAAAAGG 7442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570276544948880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |