Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4538 192 7e-44 seq4739 163 3e-35 seq4373 120 3e-22 seq1669 95.1 1e-14 >seq4538 Length=19519 Score = 192 bits (212), Expect = 7e-44 Identities = 640/980 (65%), Gaps = 33/980 (3%) Strand=Plus/Minus Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACAAC 80840 || || |||| |||||| |||| |||| || | |||| ||| | || |||||| Sbjct 7750 GCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT-CTTGACAACAAC 7692 Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGC 80894 | || || ||||| ||||| ||||| || ||| || | | ||| ||| Sbjct 7691 TTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGT 7632 Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTC 80951 ||||| || || |||| |||||| ||||| || || || | || | ||| ||| Sbjct 7631 TGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCA-CAGTA--CTC 7575 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || || |||||||||| || || ||| || ||||| ||||| |||||||| | Sbjct 7574 AACAATCTCCGTGCACAGGTTGGAG--CTTCGGATGGTACCAAGGTTCTTCTGGTTGCTC 7517 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| || ||||||||| |||| | ||| | ||||||||| ||| | | | Sbjct 7516 TTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCG 7457 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 || || | || ||||| || | |||||||| ||| ||| || || ||| | Sbjct 7456 AGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGCCTCG 7397 Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 || || | || | || |||| |||||| || |||| | | || |||||| Sbjct 7396 TATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCG 7337 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 ||||||||||||| |||||| || || || ||| ||||||||| || || Sbjct 7336 TTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGA 7277 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 ||||| || || ||| || || ||| ||| |||| || | || ||||| || Sbjct 7276 ATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGG 7217 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-- 81366 | || || || || | || || || ||||||||||| || || | ||| | | || Sbjct 7216 AGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCA 7157 Query 81367 ---CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 | |||| | |||||||| | || || | ||| || ||| || || || | | Sbjct 7156 GGACGCTTGTTA---CCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGC 7100 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 ||||| | || || | || | ||||| ||||| | || | || |||| || Sbjct 7099 ATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGG 7040 Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 | || || ||||||||| ||||| | ||| |||||| ||| || ||| Sbjct 7039 ATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTC 6980 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || |||||||| || || ||||| || | |||||||| | | |||||| ||| Sbjct 6979 AAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAG 6920 Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 | | | |||| | ||| || ||| || |||||||| | ||||| | || || Sbjct 6919 AGTT--GTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATT 6862 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCG 81720 | | ||||||| || ||||| || || | || | ||||| |||||||||||||| Sbjct 6861 TGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCT-CAATATTATCACCGTGAATACCA 6803 Query 81721 ATAGCTACACGCATAAACAT 81740 | ||| |||||||||| ||| Sbjct 6802 ACAGCAACACGCATAATCAT 6783 >seq4739 Length=56954 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||| ||||| | ||||||||||| Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| |||||||| Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC-TAGCAGACTATAA 27584 ||||| | ||||| |||||||||||| | ||||||| |||||||| |||| ||||| || Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGC-GACTACAA 21313 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| ||| || || | || | ||||| || || |||||| Sbjct 21314 CATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGGACAA 21365 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || ||| | || ||||| || Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || || || ||||||||||| || || || || || Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||| ||||||| || ||| | | ||||| || Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||||||||||| | || | |||||||| ||||| Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGTACTTCGTCTTCGTGGTGG 21133 Score = 141 bits (156), Expect = 1e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | || |||||||| |||||||| ||||| || ||| || | ||||| Sbjct 20691 GTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGAC 20750 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || |||||||| |||||||| ||||| || ||||| || ||||| || Sbjct 20751 AACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTATC 20810 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || |||||||| ||||| ||||| | || || || | ||||| || ||||||||||| Sbjct 20811 TTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGAA 20870 Query 27598 TCCACTCTTCA 27608 ||||| || || Sbjct 20871 TCCACACTCCA 20881 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || |||||||||||||| || || ||||| ||||| ||| | || | ||| | Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || |||||||||||||| || || | || || || || ||| Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | ||||||||| | || || || | || ||||| || ||||| || Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCAC 20599 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | |||||||| ||||| Sbjct 20600 TTGGTCCTCCGTCTTCGTGGTGG 20622 >seq4373 Length=63444 Score = 120 bits (132), Expect = 3e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 27447 TCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGA 27506 ||| ||||||||||| ||| | || | ||| | || | || || ||||||||||| Sbjct 31617 TCTAGAGGTTGAGTCTTCTGACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGA 31558 Query 27507 GGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG 27566 |||||| || |||||||| ||||| | || || || || ||||||||||| || | || Sbjct 31557 GGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCG 31498 Query 27567 TACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 |||||| ||| ||||| || |||||||||| || || || ||||| || | ||||| | Sbjct 31497 TACCCTCAGC-GACTACAACATCCAAAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTCC 31439 Query 27626 GCGGTGGA 27633 | || ||| Sbjct 31438 GTGGAGGA 31431 >seq1669 Length=79912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 ||| ||| | | ||||||||||| || | || | ||| | ||| | || || || Sbjct 7599 GACGATTTTTTTAGAGGTTGAGTCTTCGGACACAATCGACAATGTCAAGTCCAAGATCCA 7540 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||||||||||||||| || || ||||| || |||||||| || || || || |||||||| Sbjct 7539 GGACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAACAACTCGA 7480 Query 27558 GGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGG 27595 || | || ||||| ||| ||||| || ||||||||| Sbjct 7479 AGACGGCCGAACCCTCAGC-GACTACAACATCCAAAAGG 7442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276544948880