Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4739 104 1e-17 seq4373 93.3 3e-14 seq1669 93.3 3e-14 >seq4739 Length=56954 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || |||||||||||||||||||| || || ||| || || Sbjct 21352 AGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGA 21293 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||| ||||| || || || || ||||||||||| || || | |||||| Sbjct 21292 CCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCC 21233 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || || || ||||||||| ||| || || | || Sbjct 21232 TTATCCTGGATC-TTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGT 21174 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| |||||||| Sbjct 21173 AATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| ||| |||||||| ||||| || || || || ||||| |||| ||| Sbjct 20887 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCA 20828 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||||||||| || || || | ||| ||||||||||| || | |||||||| || Sbjct 20827 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATC 20772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| |||||| ||||||||| ||||| || || || Sbjct 21133 CCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 21074 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || |||||||| || || || || || | |||||||| || || || Sbjct 21073 AAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGG 21014 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 21013 ATACCCTCCTTGTCTTGGATCTT 20991 >seq4373 Length=63444 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| || ||||||||| ||||| || || || || || Sbjct 31441 AGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGG 31500 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || ||||| || || || ||||||||||| || || | ||||||| Sbjct 31501 CCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCC 31560 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 31561 TTGTCCTGGATCTT 31574 >seq1669 Length=79912 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || || || ||||| ||||||| |||||||| ||||| || | Sbjct 7442 CCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGA 7501 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||| ||||||||||| || | |||||||||||| |||||| Sbjct 7502 TTAGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 7547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314711383942517