Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 104 1e-17
seq4373 93.3 3e-14
seq1669 93.3 3e-14
>seq4739
Length=56954
Score = 104 bits (114), Expect = 1e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || |||||||||||||||||||| || || ||| || ||
Sbjct 21352 AGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGA 21293
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | ||| ||||| || || || || ||||||||||| || || | ||||||
Sbjct 21292 CCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCC 21233
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | || || || ||||||||| ||| || || | ||
Sbjct 21232 TTATCCTGGATC-TTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGT 21174
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || || || ||||| ||||||||
Sbjct 21173 AATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 96.9 bits (106), Expect = 2e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| |||||||| ||||| || || || || ||||| |||| |||
Sbjct 20887 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCA 20828
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
||||||||||| || || || | ||| ||||||||||| || | |||||||| ||
Sbjct 20827 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATC 20772
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||||| |||||| ||||||||| ||||| || || ||
Sbjct 21133 CCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 21074
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | || |||||||| || || || || || | |||||||| || || ||
Sbjct 21073 AAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGG 21014
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 21013 ATACCCTCCTTGTCTTGGATCTT 20991
>seq4373
Length=63444
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | |||||| || ||||||||| ||||| || || || || ||
Sbjct 31441 AGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGG 31500
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||| || ||||| || || || ||||||||||| || || | |||||||
Sbjct 31501 CCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCC 31560
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 31561 TTGTCCTGGATCTT 31574
>seq1669
Length=79912
Score = 93.3 bits (102), Expect = 3e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||| || || || ||||| ||||||| |||||||| ||||| || |
Sbjct 7442 CCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGA 7501
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||| ||| ||||||||||| || | |||||||||||| ||||||
Sbjct 7502 TTAGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 7547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314711383942517
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |