Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 123 2e-23
seq4373 87.8 2e-12
>seq4739
Length=56954
Score = 123 bits (136), Expect = 2e-23
Identities = 152/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
|||| || ||| |||||||||| ||||| || | || || | || || | |||||
Sbjct 20418 TGACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGT 20477
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
|| || || ||||| |||||||| || || || ||||| || || || | ||||||||
Sbjct 20478 CCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCA 20537
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
| || | || ||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct 20538 AGCAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCC 20597
Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| ||||| | ||| | || ||||| ||
Sbjct 20598 ACTTGGTCCTCCGTCTTCGTGGTGGTAT 20625
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||| || ||| | || ||| | ||||| ||| | |||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || || |||||||| || || || ||||| ||||||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| ||| | || || | ||| | ||||| ||||||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | |||||||| | ||| | || ||||| ||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGTACTTCGTCTTCGTGGTGGTAT 21136
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| |||| |||||| | ||||| | || || || | ||
Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || || || || || || || || ||||| || |||
Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||| || || |||||||| || || ||| || ||| ||||||
Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGCGACTACAAC 21314
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||| ||| | || ||||| | ||| | || || ||
Sbjct 21315 ATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGG 21361
>seq4373
Length=63444
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088
||| || || || | || ||| | || || | |||||| || || || ||||| ||
Sbjct 31617 TCTAGAGGTTGAGTCTTCTGACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGA 31558
Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148
|| || ||||| || |||||||| || || | |||||| || ||| | |||||| |
Sbjct 31557 GGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCG 31498
Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208
||| | ||| |||||||| ||||||||||||||| | ||| | || | ||| | ||
Sbjct 31497 TACCCTCAGCGACTACAACATCCAAAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTCCG 31438
Query 27209 GGGTGG 27214
|| ||
Sbjct 31437 TGGAGG 31432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434892582156480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |