Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 168 2e-36
seq4373 125 2e-23
seq1669 102 2e-16
>seq4739
Length=56954
Score = 168 bits (186), Expect = 2e-36
Identities = 156/198 (79%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | ||| ||||| ||||| || || ||||| ||||| | ||||||
Sbjct 20617 ACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGT 20558
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| | |||||||||||| ||||||| ||
Sbjct 20557 ACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCC 20498
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || ||||| |||||||| ||||| || || |||||
Sbjct 20497 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAG 20438
Query 211073 AGTGATCGTCTTTCCCGT 211090
||| || ||||| || ||
Sbjct 20437 AGTAATAGTCTTACCAGT 20420
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||||||||||| ||||||||||| || || | | |||
Sbjct 21128 ACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 21069
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || |||||||||||||| || || || ||||| ||||| || | ||
Sbjct 21068 TCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACC 21009
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| |||||||| ||||| || ||||| || || ||| |||||| || |
Sbjct 21008 CTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAA 20949
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| |||||||| || | ||||| || || | ||||||
Sbjct 20948 AGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| ||||| || || | ||| || ||||| || ||||||||||| || |||| || ||
Sbjct 20900 ACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGT 20841
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||| || || || || || || ||||||||||| ||||||||||| || |||| ||
Sbjct 20840 TCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACC 20781
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || ||||| || |||||||| || ||| ||||||||
Sbjct 20780 CTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAG 20721
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||| || ||||| || || | |||||| ||
Sbjct 20720 AGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691
Score = 118 bits (130), Expect = 2e-21
Identities = 161/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| || ||| ||| ||||| ||||| || || |||
Sbjct 21359 TCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAG 21300
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| |||| ||||| || ||||| || | || |||||||| || ||||
Sbjct 21299 GGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAAT 21240
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| ||||||||||| || || || || || ||||| || ||||||||
Sbjct 21239 ACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTC 21180
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||| || || | |||||| ||||| | ||||||
Sbjct 21179 TAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
>seq4373
Length=63444
Score = 125 bits (138), Expect = 2e-23
Identities = 138/184 (75%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || || || || || ||||| ||||||||||| || || ||
Sbjct 31434 TCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAG 31493
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || ||||| || ||||| || |||||||| | ||| |||||||| || || |
Sbjct 31494 GGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGAT 31553
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||||||||||||||| ||| || || ||||| |||||||| ||||||||
Sbjct 31554 TCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAACCTC 31613
Query 211070 GAGA 211073
|||
Sbjct 31614 TAGA 31617
>seq1669
Length=79912
Score = 102 bits (112), Expect = 2e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || ||||| | || ||||| || || || || ||||||||
Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| ||||||||||| || || | ||| ||||||||||||||||| || || || |||
Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 7563
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || |||||||| | | ||||||
Sbjct 7564 ATTGTGTCCGAAGACTCAACCTCTAAAAAAATCGTC 7599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159081469585385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |