Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4739 158 3e-33 seq1669 93.3 1e-13 >seq4739 Length=56954 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || |||||||| || ||||||| ||||| |||| ||| || Sbjct 21128 ACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 21069 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 21068 TCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACC 21009 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||||||| ||||| || || |||| ||| || || || Sbjct 21008 CTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAA 20949 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || ||||| || || | ||| | ||||| Sbjct 20948 AGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| || || | |||||| |||||||| ||||||| ||||| || | | ||| Sbjct 20900 ACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGT 20841 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || || || || |||||||||||||| ||||||||||| || |||||||| Sbjct 20840 TCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACC 20781 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| ||| || || |||||||| || | ||| || || | Sbjct 20780 CTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAG 20721 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || |||||||| |||||||| || Sbjct 20720 AGTAATGGTCTTGCCAGTCAAAGTCTT 20694 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||||||||| || || || || | |||||||||| | || Sbjct 20617 ACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGT 20558 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | ||||||||||| || ||||| || Sbjct 20557 ACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCC 20498 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || |||||||| || || | || || || | Sbjct 20497 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAG 20438 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 || || ||||| || |||| Sbjct 20437 AGTAATAGTCTTACCAGTCA 20418 >seq1669 Length=79912 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| ||| | |||| || ||||| || || || || |||||||| Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || ||||||||||| || || || || |||||||| |||||||| ||| ||| ||| Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 7563 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || | || || ||||| Sbjct 7564 ATTGTGTCCGAAGACTCAACCTCTAA 7589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192458638575806