Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 158 3e-33
seq1669 93.3 1e-13
>seq4739
Length=56954
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | || |||||||| || ||||||| ||||| |||| ||| ||
Sbjct 21128 ACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 21069
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || || ||||| || ||||| || ||||| ||||| || || || |||||
Sbjct 21068 TCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACC 21009
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||||||| ||||| || || |||| ||| || || ||
Sbjct 21008 CTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAA 20949
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || ||||| || || | ||| | |||||
Sbjct 20948 AGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 149 bits (164), Expect = 1e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| ||||| || || | |||||| |||||||| ||||||| ||||| || | | |||
Sbjct 20900 ACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGT 20841
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || || || || || || |||||||||||||| ||||||||||| || ||||||||
Sbjct 20840 TCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACC 20781
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| ||| || || |||||||| || | ||| || || |
Sbjct 20780 CTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAG 20721
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|| || |||||||| |||||||| ||
Sbjct 20720 AGTAATGGTCTTGCCAGTCAAAGTCTT 20694
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| | ||||||||| || || || || | |||||||||| | ||
Sbjct 20617 ACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGT 20558
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| | ||||||||||| || ||||| ||
Sbjct 20557 ACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCC 20498
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| |||||||| ||| || |||||||| || || | || || || |
Sbjct 20497 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAG 20438
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
|| || ||||| || ||||
Sbjct 20437 AGTAATAGTCTTACCAGTCA 20418
>seq1669
Length=79912
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| ||||| ||| | |||| || ||||| || || || || ||||||||
Sbjct 7444 TTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATT 7503
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| ||||||||||| || || || || |||||||| |||||||| ||| ||| |||
Sbjct 7504 AGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 7563
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| ||||| || | || || |||||
Sbjct 7564 ATTGTGTCCGAAGACTCAACCTCTAA 7589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192458638575806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |