Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq678 104 2e-17 >seq678 Length=9679 Score = 104 bits (114), Expect = 2e-17 Identities = 172/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||||| || || || || || ||||| || || || ||| ||| || || | ||| Sbjct 7783 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGAATCGGGCCTCAGGAACT 7724 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 |||||||| || | || | ||| | || ||| ||||| || || |||||| ||| ||| Sbjct 7723 TGAACTTCATTGCTGAAGCGTTCAAGTAGGTTCTCGTTGACGATTCCGTCAGAGGCAGCA 7664 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG---TTTTTTCCAG 5024 || || || | || || || || ||||| | |||||| || || || |||||| Sbjct 7663 AAGAAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAG 7604 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | | | ||| || | || ||||| || ||| ||||||| ||||| || || || || Sbjct 7603 TCGTTGAGATCCTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCAGCCTTC 7544 Query 5085 TTGTACAT 5092 |||||||| Sbjct 7543 TTGTACAT 7536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427024883036417