Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4538 318 8e-82 >seq4538 Length=19519 Score = 318 bits (352), Expect = 8e-82 Identities = 1142/1755 (65%), Gaps = 53/1755 (3%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 || || ||||||||||| ||||| || ||||||| |||| || ||||||||| || Sbjct 8500 GTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGCATACTG 8441 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | || | || || || || || ||||| || ||| |||||| ||| Sbjct 8440 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 8381 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 || || || | |||||| ||||| | | || || ||| | || ||||||| ||| Sbjct 8380 AATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGAGATCTCCCAAACAGTC 8321 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| ||| ||||||||| |||| | ||||| | ||||| || || |||||||| Sbjct 8320 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCCACCATCA 8261 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || ||| ||||| || | ||| ||| | | | | || | | | || Sbjct 8260 GCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTCCTTCAGA 8201 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || | ||| || ||||||| | || | ||||| ||| || || Sbjct 8200 AGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGAGAGTAGATGTTGGAA 8141 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 |||||||| || | |||| ||| || | ||||||| ||| |||||||||||| Sbjct 8140 GTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTTGGCATA 8081 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATT 77286 || || || | ||||| || | |||||||| || | ||| | | ||| || || Sbjct 8080 GGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGC-GATCTGTTGCTTCAAGCTAGC 8022 Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346 ||| |||||||| || | |||| |||| | || ||||| || || || Sbjct 8021 -CCAGTCCCAAAGGTCGGTAGGTGTCTTGCCCCACATGTCATATTGAAGCTCGCCCTTGG 7963 Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC-ACAACTC 77405 ||| ||| || | |||||| || || | ||| | || | || || || || | Sbjct 7962 AGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAGCTCGACGGAT- 7904 Query 77406 GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCA 77465 || ||| || ||| ||| ||||| || ||||| | | ||||| | | || || Sbjct 7903 GCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT 7844 Query 77466 ATACTATCAAACGGATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 || || ||| | || | || |||| |||| || | || ||||| |||| Sbjct 7843 GGCGACTCGAAAGGAAGGCG-AAGTGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAA 7786 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 | |||| ||||| || | |||| || | |||||||||| || || || || | Sbjct 7785 GAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGA 7726 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 | || ||||| ||||| | || | ||||| |||| || || | || || | | Sbjct 7725 TATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGA 7666 Query 77644 AATCAAATCTTCCA-TCTAT--AACAA-ACATGTTCAAAG--CTATAGATGCTAGATTAC 77697 | ||| | | | ||| | | ||| | ||||| ||| | | ||||| | ||| | Sbjct 7665 AGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGC 7606 Query 77698 AAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACAT 77756 |||| || || |||| | || || || | | ||||| || || || || | | Sbjct 7605 AAACGGCGACTTCATCTG-GTGCACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTT 7547 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATA 77816 ||| || || || || | |||||||||||| ||||| | ||||| || || || Sbjct 7546 CGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATG 7487 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 77876 || || | ||||| || |||| | ||||| |||||| | ||| | | ||| || Sbjct 7486 AAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTG 7427 Query 77877 A---TCATAG-----ATTTGTATC-GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCA 77927 | || || || | | || ||||| | |||| || | | |||| ||| Sbjct 7426 ACAGTCTTACGGCCCATGT-TCTCAGCCTCG-TATTTCTCAT-----ACAAAGCC--TCA 7376 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 || ||||| || |||| ||| |||| ||||| || || || ||||||||||||| |||| Sbjct 7375 AACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAG 7316 Query 77988 TCACCATCTTCCTT--AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 ||| | ||| || ||| || ||||| || | ||| || ||||| |||||| || | Sbjct 7315 TCA--AGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAA 7258 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 |||| |||| | ||||| ||||| |||||| || || || ||||| | | Sbjct 7257 GATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGA 7198 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 ||||| |||||||| || || || || || | | | ||||| || || ||||| |||| Sbjct 7197 CATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCT 7138 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225 |||| | ||||||||||||||| || |||||| | ||| |||| ||| ||||| || Sbjct 7137 GATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGT 7078 Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----C 78281 |||| ||||| |||| ||| || |||| | || || || | |||| || Sbjct 7077 TTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCT----GTGGACATTAAGA 7022 Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || || || || || ||||||| || | ||||||| ||||| || || || ||||| Sbjct 7021 CCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCA 6962 Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 || || ||||| ||| |||||| | || ||||| || | ||| || ||| Sbjct 6961 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTA 6902 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || ||| ||| | ||| ||||| || || ||||| |||| || | | ||||| Sbjct 6901 CCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTAG 6842 Query 78462 GTTTCAATAGCTGATTCTAT-GTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 || ||||| || | || || | || | ||||| || || || |||||||| | ||| Sbjct 6841 GTCTCAATGGCAGCCTCAATATTATCACCG-TGAATACCAACAGCAACACGCATAATCAT 6783 Query 78521 ATGCTGAGGTCTTTC 78535 ||| || || | ||| Sbjct 6782 ATGTTGTGGACGTTC 6768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694627562723360