Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 318 8e-82
>seq4538
Length=19519
Score = 318 bits (352), Expect = 8e-82
Identities = 1142/1755 (65%), Gaps = 53/1755 (3%)
Strand=Plus/Minus
Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871
|| || ||||||||||| ||||| || ||||||| |||| || ||||||||| ||
Sbjct 8500 GTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGCATACTG 8441
Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931
|| | || | || || || || || ||||| || ||| |||||| |||
Sbjct 8440 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 8381
Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991
|| || || | |||||| ||||| | | || || ||| | || ||||||| |||
Sbjct 8380 AATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGAGATCTCCCAAACAGTC 8321
Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048
||| ||| ||||||||| |||| | ||||| | ||||| || || ||||||||
Sbjct 8320 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCCACCATCA 8261
Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108
| || ||| ||||| || | ||| ||| | | | | || | | | ||
Sbjct 8260 GCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTCCTTCAGA 8201
Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168
|| || || || | ||| || ||||||| | || | ||||| ||| || ||
Sbjct 8200 AGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGAGAGTAGATGTTGGAA 8141
Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228
|||||||| || | |||| ||| || | ||||||| ||| ||||||||||||
Sbjct 8140 GTATATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTTGGCATA 8081
Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATT 77286
|| || || | ||||| || | |||||||| || | ||| | | ||| || ||
Sbjct 8080 GGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGC-GATCTGTTGCTTCAAGCTAGC 8022
Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346
||| |||||||| || | |||| |||| | || ||||| || || ||
Sbjct 8021 -CCAGTCCCAAAGGTCGGTAGGTGTCTTGCCCCACATGTCATATTGAAGCTCGCCCTTGG 7963
Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC-ACAACTC 77405
||| ||| || | |||||| || || | ||| | || | || || || || |
Sbjct 7962 AGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCAGCTCGACGGAT- 7904
Query 77406 GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCA 77465
|| ||| || ||| ||| ||||| || ||||| | | ||||| | | || ||
Sbjct 7903 GCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT 7844
Query 77466 ATACTATCAAACGGATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523
|| || ||| | || | || |||| |||| || | || ||||| ||||
Sbjct 7843 GGCGACTCGAAAGGAAGGCG-AAGTGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAA 7786
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
| |||| ||||| || | |||| || | |||||||||| || || || || |
Sbjct 7785 GAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGA 7726
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
| || ||||| ||||| | || | ||||| |||| || || | || || | |
Sbjct 7725 TATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGA 7666
Query 77644 AATCAAATCTTCCA-TCTAT--AACAA-ACATGTTCAAAG--CTATAGATGCTAGATTAC 77697
| ||| | | | ||| | | ||| | ||||| ||| | | ||||| | ||| |
Sbjct 7665 AGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGC 7606
Query 77698 AAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACAT 77756
|||| || || |||| | || || || | | ||||| || || || || | |
Sbjct 7605 AAACGGCGACTTCATCTG-GTGCACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTT 7547
Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATA 77816
||| || || || || | |||||||||||| ||||| | ||||| || || ||
Sbjct 7546 CGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATG 7487
Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 77876
|| || | ||||| || |||| | ||||| |||||| | ||| | | ||| ||
Sbjct 7486 AAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTG 7427
Query 77877 A---TCATAG-----ATTTGTATC-GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCA 77927
| || || || | | || ||||| | |||| || | | |||| |||
Sbjct 7426 ACAGTCTTACGGCCCATGT-TCTCAGCCTCG-TATTTCTCAT-----ACAAAGCC--TCA 7376
Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987
|| ||||| || |||| ||| |||| ||||| || || || ||||||||||||| ||||
Sbjct 7375 AACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAG 7316
Query 77988 TCACCATCTTCCTT--AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045
||| | ||| || ||| || ||||| || | ||| || ||||| |||||| || |
Sbjct 7315 TCA--AGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAA 7258
Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105
|||| |||| | ||||| ||||| |||||| || || || ||||| | |
Sbjct 7257 GATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGA 7198
Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165
||||| |||||||| || || || || || | | | ||||| || || ||||| ||||
Sbjct 7197 CATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCT 7138
Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225
|||| | ||||||||||||||| || |||||| | ||| |||| ||| ||||| ||
Sbjct 7137 GATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGT 7078
Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----C 78281
|||| ||||| |||| ||| || |||| | || || || | |||| ||
Sbjct 7077 TTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCT----GTGGACATTAAGA 7022
Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341
|| || || || || ||||||| || | ||||||| ||||| || || || |||||
Sbjct 7021 CCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCA 6962
Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401
|| || ||||| ||| |||||| | || ||||| || | ||| || |||
Sbjct 6961 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTA 6902
Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461
|| ||| ||| | ||| ||||| || || ||||| |||| || | | |||||
Sbjct 6901 CCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTAG 6842
Query 78462 GTTTCAATAGCTGATTCTAT-GTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520
|| ||||| || | || || | || | ||||| || || || |||||||| | |||
Sbjct 6841 GTCTCAATGGCAGCCTCAATATTATCACCG-TGAATACCAACAGCAACACGCATAATCAT 6783
Query 78521 ATGCTGAGGTCTTTC 78535
||| || || | |||
Sbjct 6782 ATGTTGTGGACGTTC 6768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694627562723360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |