Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 343 2e-89
>seq4538
Length=19519
Score = 343 bits (380), Expect = 2e-89
Identities = 1161/1783 (65%), Gaps = 40/1783 (2%)
Strand=Plus/Minus
Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431
||||| |||| ||||| || | || || | | || || ||||||||||| ||||| |
Sbjct 8535 CAACGGTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCT 8476
Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491
| ||||||| |||| || ||||||||| || || | || | || ||
Sbjct 8475 TGAGACCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCT 8416
Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551
|| || || ||||| || ||| |||||| ||||| || || | |||||| ||||| |
Sbjct 8415 TCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCT 8356
Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611
| || || ||| | || ||||||| ||| ||| ||| ||||||||| |||
Sbjct 8355 GGACGATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTG 8296
Query 75612 GAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668
| | |||| | ||||| || ||||| ||||||| || ||| ||||| || | |
Sbjct 8295 GGATGTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGT 8236
Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728
|| ||| | | | || | | | || || || || |||| ||| || |
Sbjct 8235 CAGACCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACT 8176
Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788
|||||| | || | |||| ||| || || |||||||| || | |||| |||
Sbjct 8175 CTCCAGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA 8116
Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848
|| | ||||||| || ||||| |||||||| || || | ||||| || | |
Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056
Query 75849 GACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTAC 75906
||||||| || | ||| | | ||| || || ||| |||||||| || | |||
Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCAAGCTAGC-CCAGTCCCAAAGGTCGGTAGGTGT 7998
Query 75907 AACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTC 75966
|||| | || ||||| || || ||| ||| ||| || | |||||| ||
Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938
Query 75967 GTAAGTCCC----GTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022
||| || || ||| || ||||| | || | | | || ||| ||| ||| |
Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGA-CGGATGCAGTC---AAAGCAGCGTGATAGA 7882
Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082
|||| || ||||| | | || || | | || || | || |||||| | |
Sbjct 7881 TTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGAAGGCG-A 7823
Query 76083 AAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140
| | || ||| ||||| || || || ||||| |||| | |||| ||||| || |
Sbjct 7822 AGTGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAA 7764
Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200
|||| || |||||||||| ||||| || || ||||| ||||| ||||| | ||
Sbjct 7763 ATTGCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT 7704
Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATTTTCCATCTAT-C 76258
||||||| |||| || || | || || | || ||| || | | ||| | |
Sbjct 7703 CTTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTC 7644
Query 76259 ACAAACATATT----AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATT 76314
| ||||||| |||||| | ||||| | ||| |||||||| || |||| | |
Sbjct 7643 ATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TG 7585
Query 76315 GGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373
|| || | | ||||||||||| || || | ||| || ||||| || | |
Sbjct 7584 CACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCT 7525
Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433
||||||||||| ||| || | ||||| || || | || || |||| || || |||
Sbjct 7524 GGTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCT 7465
Query 76434 GTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC---T 76490
| | ||||| |||||| | ||| | | ||| || | || || | | |
Sbjct 7464 GAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGT 7408
Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550
|||| || |||| ||| || ||||| ||||| || |||| ||| ||||||
Sbjct 7407 TCTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAAC 7348
Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT--AACCCGTTTCAT 76608
||||||| || || || |||||||||| ||| ||| | ||| || ||| || |||||
Sbjct 7347 CAGGACACTCGTTAGGGCACATCAATGTCCAGTCA--AGGTTCTTTTCAACACGCTTCAT 7290
Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668
|| | ||| || ||||| |||||| || ||||| |||| | ||||| |||||
Sbjct 7289 GAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCC 7230
Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728
|||||| || || |||||||| | | ||||| |||||||| || || || ||
Sbjct 7229 GTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 7170
Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788
|| | | |||| || || || ||||| |||||||| | ||||||||| ||||| || |
Sbjct 7169 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAA 7110
Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848
||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| || |||
Sbjct 7109 AACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCC 7050
Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908
| ||||| || | | | || || || || || || | ||||| || | |||
Sbjct 7049 AGTGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGC 6990
Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968
|| ||||| |||||||| || || || || || || ||| |||||| | || ||
Sbjct 6989 GCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAA 6930
Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028
||| || | ||| || ||| || ||| ||| | ||| ||||| || || ||
Sbjct 6929 ACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT 6870
Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA-TCCCATTGAT 77087
|| |||| || | | ||||| || ||||| | || || ||| | || | |
Sbjct 6869 AAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-T 6811
Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130
|||| || ||||| |||||||| | |||||| || || |||||
Sbjct 6810 GAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTC 6768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712892078431680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |