Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4538 343 2e-89 >seq4538 Length=19519 Score = 343 bits (380), Expect = 2e-89 Identities = 1161/1783 (65%), Gaps = 40/1783 (2%) Strand=Plus/Minus Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 ||||| |||| ||||| || | || || | | || || ||||||||||| ||||| | Sbjct 8535 CAACGGTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCT 8476 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | ||||||| |||| || ||||||||| || || | || | || || Sbjct 8475 TGAGACCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCT 8416 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || || || ||||| || ||| |||||| ||||| || || | |||||| ||||| | Sbjct 8415 TCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCT 8356 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | || || ||| | || ||||||| ||| ||| ||| ||||||||| ||| Sbjct 8355 GGACGATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTG 8296 Query 75612 GAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 | | |||| | ||||| || ||||| ||||||| || ||| ||||| || | | Sbjct 8295 GGATGTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGT 8236 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 || ||| | | | || | | | || || || || |||| ||| || | Sbjct 8235 CAGACCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACT 8176 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 |||||| | || | |||| ||| || || |||||||| || | |||| ||| Sbjct 8175 CTCCAGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA 8116 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 || | ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056 Query 75849 GACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTAC 75906 ||||||| || | ||| | | ||| || || ||| |||||||| || | ||| Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCAAGCTAGC-CCAGTCCCAAAGGTCGGTAGGTGT 7998 Query 75907 AACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTC 75966 |||| | || ||||| || || ||| ||| ||| || | |||||| || Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938 Query 75967 GTAAGTCCC----GTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022 ||| || || ||| || ||||| | || | | | || ||| ||| ||| | Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGA-CGGATGCAGTC---AAAGCAGCGTGATAGA 7882 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082 |||| || ||||| | | || || | | || || | || |||||| | | Sbjct 7881 TTGTCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGAAGGCG-A 7823 Query 76083 AAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | | || ||| ||||| || || || ||||| |||| | |||| ||||| || | Sbjct 7822 AGTGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAA 7764 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 |||| || |||||||||| ||||| || || ||||| ||||| ||||| | || Sbjct 7763 ATTGCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT 7704 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATTTTCCATCTAT-C 76258 ||||||| |||| || || | || || | || ||| || | | ||| | | Sbjct 7703 CTTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTC 7644 Query 76259 ACAAACATATT----AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATT 76314 | ||||||| |||||| | ||||| | ||| |||||||| || |||| | | Sbjct 7643 ATCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TG 7585 Query 76315 GGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 || || | | ||||||||||| || || | ||| || ||||| || | | Sbjct 7584 CACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCT 7525 Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433 ||||||||||| ||| || | ||||| || || | || || |||| || || ||| Sbjct 7524 GGTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCT 7465 Query 76434 GTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC---T 76490 | | ||||| |||||| | ||| | | ||| || | || || | | | Sbjct 7464 GAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGT 7408 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 |||| || |||| ||| || ||||| ||||| || |||| ||| |||||| Sbjct 7407 TCTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAAC 7348 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT--AACCCGTTTCAT 76608 ||||||| || || || |||||||||| ||| ||| | ||| || ||| || ||||| Sbjct 7347 CAGGACACTCGTTAGGGCACATCAATGTCCAGTCA--AGGTTCTTTTCAACACGCTTCAT 7290 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 || | ||| || ||||| |||||| || ||||| |||| | ||||| ||||| Sbjct 7289 GAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCC 7230 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 |||||| || || |||||||| | | ||||| |||||||| || || || || Sbjct 7229 GTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 7170 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | |||| || || || ||||| |||||||| | ||||||||| ||||| || | Sbjct 7169 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAA 7110 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 ||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| || ||| Sbjct 7109 AACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCC 7050 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 | ||||| || | | | || || || || || || | ||||| || | ||| Sbjct 7049 AGTGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGC 6990 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 || ||||| |||||||| || || || || || || ||| |||||| | || || Sbjct 6989 GCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAA 6930 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 ||| || | ||| || ||| || ||| ||| | ||| ||||| || || || Sbjct 6929 ACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT 6870 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA-TCCCATTGAT 77087 || |||| || | | ||||| || ||||| | || || ||| | || | | Sbjct 6869 AAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-T 6811 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 |||| || ||||| |||||||| | |||||| || || ||||| Sbjct 6810 GAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTC 6768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712892078431680