Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4739 98.7 2e-15 seq4373 86.0 1e-11 >seq4739 Length=56954 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||||||| || | || || || || || |||||||||||||| || | | ||||| Sbjct 20897 GAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCG 20838 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| || ||||||||||| | || ||||||| | || || || Sbjct 20837 TCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTC 20778 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || || | || | | |||| || || || || ||||| Sbjct 20777 CTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGT 20718 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||| || ||||| || | |||||| |||| Sbjct 20717 AATGGTCTTGCCAGTCAAAGTCTTGACGA 20689 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| ||||| |||||||||||||| |||| || |||| ||||| Sbjct 21118 AGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCC 21059 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||| || || | | ||| || ||||| ||| Sbjct 21058 TCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCT 20999 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | || || || ||||| | ||| || || Sbjct 20998 TGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTC 20939 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||||| |||||| Sbjct 20938 TTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || ||||||||||| || || ||||||||||||| | || | || || Sbjct 20608 GAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTC 20549 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || || ||||||||||| |||| | || ||||| | | || |||||||| | Sbjct 20548 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGT-TGTTGGTCTGGAGGAATGCCTTCCTTGT 20490 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| | || | | | || ||| ||||||||| |||||||||| Sbjct 20489 CCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAG 20430 Query 152071 TTTTGCCCGT 152080 | || || || Sbjct 20429 TCTTACCAGT 20420 >seq4373 Length=63444 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| || || ||||| |||||||||||||| ||| | || | Sbjct 31440 GAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACG 31499 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| ||||||||||| | | ||| ||||| | | |||||| Sbjct 31500 GCCGTCTTCGAGTTGCTTT--CCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCC 31557 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||||| | || | |||| ||| ||| || || ||| Sbjct 31558 TCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAACCTCTAGA 31617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153750593970579