Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 98.7 2e-15
seq4373 86.0 1e-11
>seq4739
Length=56954
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||||||| || | || || || || || |||||||||||||| || | | |||||
Sbjct 20897 GAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCG 20838
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || ||| || ||||||||||| | || ||||||| | || || ||
Sbjct 20837 TCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTC 20778
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || || || | || | | |||| || || || || |||||
Sbjct 20777 CTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGT 20718
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
||| || ||||| || | |||||| ||||
Sbjct 20717 AATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||||||||| ||||| |||||||||||||| |||| || |||| |||||
Sbjct 21118 AGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCC 21059
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || ||||| || || | ||| || || | | ||| || ||||| |||
Sbjct 21058 TCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCT 20999
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || ||| | || | | || || || ||||| | ||| || ||
Sbjct 20998 TGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTC 20939
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | ||||| ||||||| ||||||
Sbjct 20938 TTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 93.3 bits (102), Expect = 1e-13
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | || ||||||||||| || || ||||||||||||| | || | || ||
Sbjct 20608 GAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTC 20549
Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || || ||||||||||| |||| | || ||||| | | || |||||||| |
Sbjct 20548 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGT-TGTTGGTCTGGAGGAATGCCTTCCTTGT 20490
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || ||||| | || | | | || ||| ||||||||| ||||||||||
Sbjct 20489 CCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAG 20430
Query 152071 TTTTGCCCGT 152080
| || || ||
Sbjct 20429 TCTTACCAGT 20420
>seq4373
Length=63444
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/180 (71%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || ||||| || || ||||| |||||||||||||| ||| | || |
Sbjct 31440 GAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACG 31499
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| ||||| || ||||| ||||||||||| | | ||| ||||| | | ||||||
Sbjct 31500 GCCGTCTTCGAGTTGCTTT--CCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCC 31557
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || ||||||| | || | |||| ||| ||| || || |||
Sbjct 31558 TCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAACCTCTAGA 31617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153750593970579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |