Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 190 4e-43
seq4373 120 6e-22
seq1669 116 8e-21
seq678 95.1 3e-14
>seq4739
Length=56954
Score = 190 bits (210), Expect = 4e-43
Identities = 181/229 (79%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || |||||||||| ||| | ||| || ||||||||||||||||| |
Sbjct 21134 ACCACCACGAAGACGAAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 21075
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| ||||| || || || || || | || ||||| ||| |
Sbjct 21074 CAAG-GTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTG 21016
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| ||||||||||||||||||||||| | || || | |||||||| || || | ||| |
Sbjct 21015 GGATACCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAA 20956
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| | |||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 20955 CTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 168 bits (186), Expect = 1e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | || |||| || | ||| ||| ||||||||||||||||| |
Sbjct 20906 ACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGA 20847
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| |||||||| || || ||||| | |||||||||||| ||
Sbjct 20846 GAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGG 20787
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||| || || ||||| | || ||| | || || ||||| || | ||||||
Sbjct 20786 AATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGAC 20727
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|||||||| || ||||| || ||||||||||| ||||
Sbjct 20726 CTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| |||| || | ||||| || ||||| ||||||||||| |
Sbjct 21361 CCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTA 21302
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || |||||||| | ||| || || || || ||||| || |||||||| |||
Sbjct 21301 AGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGA 21242
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || |||||||| | || || |||| || |||||||||| || ||
Sbjct 21241 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACC 21182
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || ||||||||||| || || ||||||||
Sbjct 21181 TCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || || || || |||||||| || |
Sbjct 20623 ACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGA 20564
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || || ||||| || || || ||||| |||||||| ||||||||||| ||
Sbjct 20563 AAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGG 20504
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| |||||||| | || ||| | ||||| || || |||| || ||
Sbjct 20503 AATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTAC 20444
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||||||||| || |||||||| ||||
Sbjct 20443 TTCGAGAGTAATAGTCTTACCAGTCA 20418
>seq4373
Length=63444
Score = 120 bits (132), Expect = 6e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || || ||||| | || || |||||||||||||||||
Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || ||||| || ||||| |||||||| || |||||||| ||
Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | ||| || | ||||| ||||| |||| || ||
Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAACC 31611
Query 283053 TCGAGA 283058
|| |||
Sbjct 31612 TCTAGA 31617
>seq1669
Length=79912
Score = 116 bits (128), Expect = 8e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 282904 TGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGG 282963
||| | | ||||||||||||||||| || || ||||| || || |||||||| ||||
Sbjct 7436 TGCCTACCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGG 7495
Query 282964 CAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTA 283023
| ||||| | |||||||||||| || || ||||||||||| |||||||| | || |
Sbjct 7496 CGAAGATTAGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA 7555
Query 283024 CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067
| | ||||| |||||||||| || || || | | ||||||
Sbjct 7556 CATTGTCGATTGTGTCCGAAGACTCAACCTCTAAAAAAATCGTC 7599
>seq678
Length=9679
Score = 95.1 bits (104), Expect = 3e-14
Identities = 169/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223
|| |||| || | |||| | ||| |||||||| | || ||| ||||||| ||
Sbjct 8191 TCATCACTGAGGCTGTTGAGATTGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTC 8250
Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283
| | || ||||| |||| | ||| |||||| ||||| ||||| |||||||| ||
Sbjct 8251 TCCTTGGTATGAACGCTGGCTTGATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTC 8310
Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343
|| | | || || | ||||| || || || ||||| |||| || ||||||
Sbjct 8311 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGA 8370
Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403
||| || || || || || ||||||||||| |||||||| ||||| |||| |
Sbjct 8371 ACATCTCTCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 8430
Query 230404 CCGGTGT 230410
|||||||
Sbjct 8431 CCGGTGT 8437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046675509517846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |